<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP34047

Description Uncharacterized protein
SequenceMQPSNGSKDVSSAAAEKTCGATGSSGNQQFCLRWNNYQSNLTNVFDQLLQNGTFVDVTIACDGHTLKAHKIVLSACSPYFQSMLAENKCKHPIVILKDVQWPELRAVVDFMYKGEINVYQEQIGPLLRVAETLKVRGLADVSNEQLTGGGGCEPQAAATVVTPTTVSPESPKQPARKRHRLSPPVASPESVMSDMGSSAADTPLNLHHMPPPPAPHHQQQVQSHVHQHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQHQQQQHQQQQQQQQQQQQQQQQSSQQPPAPQAMPPSASSASSSSSSSSSIPPPSSVADDMEIKPGIAEMIREEERAKMFESSQAWLASTSSPMTSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNLLGPSADGGADLRPKGRGRPQRILLGFWPEDHIQNVIRTVVFRDAQNIKEEALHLYPRIPCLSDPMSGGHYGNNAVQSVEGPVSPNSAAAAVAAVAQGIRQQMMAAAGHNISPSSGVDAFALLASSHLPSPADMSPNSSPPDSPLVSNNNVEVSLSGYKRSIDHSNQDNVFVEDIDELVKNSHCTGGSSMGNTIDQQPLPLVIEQRTE
Length650
PositionTail
OrganismAcyrthosiphon pisum (Pea aphid)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Sternorrhyncha> Aphidomorpha> Aphidoidea> Aphididae> Macrosiphini> Acyrthosiphon.
Aromaticity0.05
Grand average of hydropathy-0.737
Instability index78.93
Isoelectric point6.29
Molecular weight71659.78
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
DNA binding	GO:0003677	IEA:UniProtKB-UniRule

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP34047
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     139.68|      16|      16|     231|     246|       1
---------------------------------------------------------------------------
  233-  249 (32.62/ 8.51)	QQQQQQQQQQQQQQqQQ
  250-  265 (37.64/10.73)	QQQQQQQQQQQQQQ.HQ
  266-  281 (35.98/ 9.99)	QQQQHQQQQHQQQQ.QQ
  282-  297 (33.44/ 8.87)	QQQQQQQQQQSSQQ.PP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.96|      22|      22|     102|     123|       2
---------------------------------------------------------------------------
  102-  123 (38.20/33.14)	PELRAVVDFMYKGEINVYQEQI
  125-  146 (34.76/29.47)	PLLRVAETLKVRGLADVSNEQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.70|      25|      26|     163|     188|       4
---------------------------------------------------------------------------
  154-  178 (16.78/ 7.18)	....PQAA.............ATvvtPTTVSPESPKQPArKR
  179-  206 (40.03/18.42)	HRLSPPVA.............SPesvMSDMGSSAADTPL.NL
  551-  587 (23.88/ 7.47)	HNISPSSGvdafallasshlpSP.adMSP.NSSPPDSPL...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP34047 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LADVSNEQLTGGGGCEPQAAATVVTPTTVSPESPKQPARKRHRLSPPVASPESVMSDMGSSAADTPLNLHHMPPPPAPHHQQQVQSHVHQHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQHQQQQHQQQQQQQQQQQQQQQQSSQQPPAPQAMPPSASSASSSSSSSSSIPPPSSVADDMEIKPGIAEMIREEERAKMFESSQAWLAS
138
357










Molecular Recognition Features






MoRF SequenceStartStop




1) ARKRHRL
175
181