<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP34036

Description Mediator of RNA polymerase II transcription subunit 5
SequenceMDSRAAAAEAMRSAIEYWSQFVARCISQRLDTEKFENYVRLVHDQHPLPPALVADFFLRPQPSNDNSLDPRIPPYLQVLTRLGYVDAPSILKALYKYSSLHAYAQQPNANDGKETEKETEQSDDKEKDEQKQKVTRWKSSYWAEEVLFYGITKSVVEGKAIRDSKTALDMTRIISKLMVLFTTAFAADMLEQLHTAQVRDEMESSRAALVALLLRMCENDILVGAVSKPIAKDVRKEMSASLASFVPTLQLVPQITDKLEQFRTEILASSDPADKKKQATNAAMDELLDSAVGLDNFVVAEIPVSNTRAGLYIYLNAALIARPLLDDHALFSYMSNKYQGDIQSSAIDLILASFDILANAVFRNEGQKDAHLLRSFLINKVPILLYQLLPPGFPGTSAEFCITEALSHVDTSLFPTASLMFDESRNNNPYTESIREEFCAACVLHGLVQREHVERILGEISLSYEPSLQKHSKDKLVQDCLSDTEKIQGLVRELDKMDGNVGAVCQALVEVLRQSCHSKETMSLKVLCSQLAAKPQSLDVILLFEKLPNILEPLCQLLDNWRYEDDQEEYQPVYEEFGAVLLLVLAFTYRYNLNAVDIGIASPDSWVAKIIGRGHIGRQCNELTQRENDHLNGWIHGLFDTEAGGLGDELMSSCPPQEFYLVVAPLFQSIVVAYTHGYLNDESLKGGIEYLVDTFLLPSLVPAIRFLADYLWIDQKEQKSIIKILQLILLPSSISGEASTMLSSVKNLIAKPLEHALRTYQRRDPKNQDIEPLLRTLKDSIPLSRRTGGTDLNELESWTVTPPTGLSSAIKLTIQGLVHWSIHPAMNSMPTSYTHRQILAALKIMGPKRVLHVILEEIRQHTEAGSASIVYDVAISLICAPDAAKDAPAVVDANGNMLPPVQRQRSLRDLLKVEAEGCRKLQKKDPALAEIVVRLHRRVEAQMIIPQPPGILQTAEMSLNLDGDTAALGDAMAAAASGVQGDNMSVDNLTLDVSMGGVPSDLGLGSANDGGSLDPSGDAAMFEGFDTQDMDNFDWDDIGNSFQ
Length1043
PositionTail
OrganismFusarium oxysporum f. sp. raphani 54005
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium> Fusarium oxysporum species complex.
Aromaticity0.07
Grand average of hydropathy-0.149
Instability index44.24
Isoelectric point4.98
Molecular weight115615.61
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP34036
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.84|      27|     158|     741|     786|       2
---------------------------------------------------------------------------
  319-  351 (37.61/11.50)	LIARPLldDHALFSYMsnkyQGDIQSSAIDLIL
  748-  774 (49.22/38.59)	LIAKPL..EHALRTYQ....RRDPKNQDIEPLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.25|      33|     151|     644|     680|       4
---------------------------------------------------------------------------
  644-  676 (61.45/40.28)	GGLG.DELMS..SCPPQEF............YLVVAPLFQSIVVAYTH
  788-  835 (46.80/21.16)	GGTDlNELESwtVTPPTGLssaikltiqglvHWSIHPAMNSMPTSYTH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.21|      17|      34|     197|     213|       5
---------------------------------------------------------------------------
  197-  213 (27.94/18.46)	QVRDEMESSRAALVALL
  233-  249 (29.27/19.67)	DVRKEMSASLASFVPTL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP34036 with Med5 domain of Kingdom Fungi
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