<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP34011
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTVTKWTSLSRQSLQRRFSVSEFGNLLQDSSQVDGKRIFGALVECRATFCVAGDPLVSLYIDHLASSGLVSISDALLVLVSRWNAAATPLPQNWLDCYSQTLQDLTMLVVSPKCKMTLSEARIALAVSSRWLSSVARTLQQDLIEPSSVGHSNVLEALGFLVASVAATDGGLEALSPDDAQERSSQTRPGLQLRESVRHAFELCLPLYSALSAHLIERLNTVLKHVNLLDNGDSQEGDSSARSSAMQALHFQVAIPETQMVASKAGTIMFLEALLLTGATIDDSSTVNYMCSRHQNEYQSAFNDILGASFYILKTQATHSQHGLCYQQCQLFVQSKLPIILSMISASSFNSFHTEQAITETWRLIAPQLSDQNLSLTGARFLHTCSLHNLMAAQAATQLLGSEGLPSNVSRGLHAKDEVVNQVRASHLRGPKLVDELVRGEGSALFISQGLVEIMHSYCQNKETQYLKELANAILRKPAAIDCISLFIRPAHWLGPLCVLLDDWLWDDIHGEAQPVYDEFGAVFLLVLVTKTRLGLSKSELGIRKKDGFLAQYFDQEYSEESLNGTSAEKTTHLGNWINALYLAEGLSDELFTSCSPHDFYLLIPSLLQQSVAAHHQGKLSQESLKAGLDYLLEPFLLPSLIPALNCVGTLLQEDPISAGVVLEVLVKSPGSADSQEIHQTILETCAPQLQNSIRACDPDKFGSVLRLLDQCSQSSFSSALDLELRSQKGQLLDELHSHVLTVIASHGDFDFDKHPPKPSVPAMVRRAVQVHGVEVVLQILIGVLLQLSDSPDFLFSLDVVATLVSMTGDELCDILRLRHSTIGTLLKKGDTLLAEAVVRLYRLVEAYRNLLVVHEINLDTFSFAQQLTNVDTTNPNPDGSATVSGSMELQPDPTQTDGIDQVLDEVAAMGNMDSNDADMNFDALYGLQGTDMDLNDLDLDMF |
Length | 943 |
Position | Tail |
Organism | Capronia coronata CBS 617.96 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae> Capronia.
|
Aromaticity | 0.06 |
Grand average of hydropathy | 0.024 |
Instability index | 43.13 |
Isoelectric point | 4.90 |
Molecular weight | 103260.18 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP34011
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 124.37| 32| 35| 81| 112| 1
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52- 74 (28.82/13.39) ......AGDPLVSLYID........HLASSGLVSISD
81- 112 (59.24/35.08) SRW.NAAATPLPQNWLD....CYSQTLQDLTMLVVSP
129- 164 (36.31/18.73) SRWlSSVARTLQQDLIEpssvGHSNVLEALGFLVAS.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 85.43| 28| 32| 601| 632| 2
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605- 632 (48.90/41.85) PSLLQQSVAA.HHQGKLSQE.SLKAG..LDYL
635- 666 (36.53/19.09) PFLLPSLIPAlNCVGTLLQEdPISAGvvLEVL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 99.58| 32| 35| 341| 375| 3
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341- 375 (46.51/32.10) LSMISASSFNSFHTEQAITetwRLIAPQLSDQNLS
379- 410 (53.07/28.35) ARFLHTCSLHNLMAAQAAT...QLLGSEGLPSNVS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 78.40| 23| 132| 444| 467| 4
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444- 467 (36.95/24.64) ALFISQGLVEIMHSYCQNKETqYL
580- 602 (41.45/23.40) ALYLAEGLSDELFTSCSPHDF.YL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 75.12| 22| 678| 217| 238| 10
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217- 238 (37.25/23.58) ERLNTVLKHVNLLDNGDSQEGD
898- 919 (37.87/24.09) DGIDQVLDEVAAMGNMDSNDAD
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