<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP34009

Description CMGC/CDK/CDK8 protein kinase
SequenceMSRPGTSLTIAQQLRKTTQLGLEEAARNLEKKHSGNYYTAKVKIGQKYNIIGFISSGTYGRVYKAVEKNPKSDPSSPAGSAAPKELYAIKKFKPEKEGDNVQYMGLSQSAIREMSLCTELSHPNVVHLAEIILEDKCVFMVFEYCEHDLLQIIHHHTQPTRRPIPATMIRSILFQLLNGLYYLHQNWVIHRDLKPANIMVTSSGHVRIGDLGLARLFHKPLSSLYSGDKVVVTIWYRSPDLLLGARHYTPAIDMWAVGCIFAELLSLRPIFKGEETKMDSKKTVPFQRNQMGKIVEILGLPRRENWKGLADMPDYPQLQSLVVSRGGMPGGGLYPTSSNSINRGGSGGSANNNGTGLENWYNNCLRHASYPPDKSPGQRGFQLLSELFEYDPDKRLTAERALHHDYFRNTDDGPHKGEIWVSNNCFEGLDEVYPHRRVSTETNDIGTSSLPGTKRGGLPDDSLLPAAKRR
Length470
PositionKinase
OrganismCapronia coronata CBS 617.96
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Chaetothyriomycetidae> Chaetothyriales> Herpotrichiellaceae> Capronia.
Aromaticity0.08
Grand average of hydropathy-0.500
Instability index48.03
Isoelectric point9.11
Molecular weight52646.38
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP34009
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.24|      12|      17|     312|     327|       1
---------------------------------------------------------------------------
  315-  327 (18.41/16.07)	YPqLQSLVVSRGG
  334-  345 (23.83/ 6.94)	YP.TSSNSINRGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.52|      15|      34|     258|     273|       2
---------------------------------------------------------------------------
  258-  273 (23.88/17.32)	GCIfAELLSL..RPIFKG
  292-  308 (23.64/12.08)	GKI.VEILGLprRENWKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.35|      56|     206|     174|     230|       3
---------------------------------------------------------------------------
  174-  230 (94.14/60.09)	FQLLNGLY.YLHQNWVI.HRDLKPANIMVTSSGHVRiGDLGLARLFHKPLSSLYSGDKV
  381-  438 (94.20/56.13)	FQLLSELFeYDPDKRLTaERALHHDYFRNTDDGPHK.GEIWVSNNCFEGLDEVYPHRRV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP34009 with CDK8 domain of Kingdom Fungi
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