<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33937

Description Uncharacterized protein
SequenceMAVAGKINVTPVEEKPVDDEPLVFANKQEAKNAFKSLLESANVQSDWTWEQAMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTIMLEESKELTSSTRWSKAVSMFENDERFKAVERARDREDLFESYIVELERKEKEKAAEEHRRNAAEYRKFLESCDFIKVNSQWRKVQVRLEDDERCLRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRVERKNRDEFRKLMEEHIDAAALTAKTPWRDYCLKVKDLPQYEAVASNTSGSTPKDLFEDVTEELEKQYHDDKARVKDTLKLGKVSFESSWTFDDFKAAILEDIGSPPILEINLKLVYEELLERAKEKEEKETKKRQRLADDFTKLLHSKKEITTTSNWEDCRQLFEECQEYRAIGEESVTRDIFEEYITHLQEKAKEKERKREEEKARKEKEREEKEKRKEKEKDRDREREKGKERSKKEDTDSENMDITDSHGNKEDKKREKDRDRDRDRKHRKRHQSATDDISSDKDEKEDSKKRKHSSDRKKSRKHAYSPESDGESRHKKHRRDHRDSRRNGGHEELEDGELGEDEEIQ
Length586
PositionUnknown
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.06
Grand average of hydropathy-1.518
Instability index49.04
Isoelectric point6.07
Molecular weight70364.46
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33937
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     189.50|      38|      38|     458|     495|       1
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  430-  454 (31.77/ 8.96)	KEKERKREEEKARKEKERE.............eKE.KRK
  458-  495 (65.92/27.06)	KDRDREREKGKERSKKEDTDSENMDITDSHGN.KEDKKR
  497-  530 (51.54/19.44)	KDRDRDRDR..KHRKRH..QSATDDISSDKDE.KEDSKK
  531-  558 (40.27/13.46)	RKHSSDRKK....SRKHAYSPE......SDGE.SRHKKH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     404.73|      63|      65|      27|      89|       2
---------------------------------------------------------------------------
   27-   78 (70.28/29.90)	.......................KQEAKNA..FKSLL.E....S.AN.VQSDWTWEQAMREIIND.KRYGAL..KTLG.......ER.KQAFNEY
   79-  146 (81.35/35.71)	LGQRKKLEAEE........rrmrQKKAREE..FTIMLeE....S.KE.LTSSTRWSKAVSMFEND.ERFKAV..ERAR.......DR.EDLFESY
  147-  213 (73.55/31.62)	IVELERKEKEK..........aaEEHRRNAaeYRKFL.E....S.CDfIKVNSQWRKVQVRLEDD.ERCLRL..EKL........DR.LLIFQDY
  214-  294 (66.02/27.67)	IRDLEKEEEEQkkiqkeqlrrveRKN.RDE..FRKLM.EehidA.AA.LTAKTPWRDYCLKVKDL.PQYEAVasNTSG.......STpKDLFEDV
  295-  354 (39.20/13.59)	...TEEL...E......kqyhddKARVKDT..LK..L.G....K.VS.FESSWTF........DD.FKAAIL..EDIGsppileiNL.KLVYEEL
  355-  421 (74.35/32.04)	LERAKEKEEKE.........tkkRQRLADD..FTKLL.H....SkKE.ITTTSNWEDC.RQLFEEcQEYRAI..GEES.......VT.RDIFEEY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33937 with Med35 domain of Kingdom Viridiplantae
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