<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33932

Description Pre-mRNA-processing factor 40-A-like protein
SequenceMVPNQHGQPFIPSSQQFQPVGQGIPPPNLGMHPAHSQPVQFSQQMQQYPPRPSQPGHPMPSSQGLPMSYIQTRPIAPGPPQSQQHAAPFTNQMPPGGAMPFSSSYSYAPSSFVQPQNNASSVSQFQQMSQMQAPTAPGPGQPWLSSGIHSAPPVAPGQQVGQPPSAASSADAATNVPSTTQQSSSDWQEHTSSDGRRYYYNKRTKQSVWDKPVELMTPIERADASTVWKEYSSPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKESSQGMQSETGLASHGPVAVGSSEMPSAGTPVASGAPLVATGVASSPVAVTPVASLPNSSMTISGSSATPGSQSAVASAVAVQPPMVTVTPLNPAISGSTGVSPALGNANTTPVRTYDNRVSQDIASSVDGASILDIEEAKKGMAVAGKINVTPVEEKPVDDEPLVFANKQEAKNAFKSLLESANVQSDWTWEQAMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTIMLEESKELTSSTRWSKAVSMFENDERFKAVERARDREDLFESYIVELERKEKEKAAEEHRRNAAEYRKFLESCDFIKVNSQWRKVQVRLEDDERCLRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRVERKNRDEFRKLMEEHIDAAALTAKTPWRDYCLKVKDLPQYEAVASNTSGSTPKDLFEDVTEELEKQYHDDKARVKDTLKLGKVSFESSWTFDDFKAAILEDIGSPPILEINLKLVYEELLERAKEKEEKETKKRQRLADDFTKLLHSKKEITTTSNWEDCRQLFEECQEYRAIGEESVTRDIFEEYITHLQEKAKEKERKREEEKARKEKEREEKEKRKEKEKDRDREREKGKERSKKEDTDSENMDITDSHGNKEDKKREKDRDRDRDRKHRKRHQSATDDISSDKDEKEDSKKRKHSSDRKKSRKHAYSPESDGESRHKKHRRDHRDSRRNGGHEELEDGELGEDEEIQ
Length994
PositionUnknown
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.06
Grand average of hydropathy-1.129
Instability index59.25
Isoelectric point6.29
Molecular weight113097.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33932
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      27.02|       8|      21|     180|     189|       1
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  180-  189 (11.73/12.38)	TQQSSsdWQE
  204-  211 (15.30/ 7.70)	TKQSV..WDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     211.03|      38|      38|     866|     903|       2
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  542-  605 (24.55/ 7.33)	.ERARDREDlfesyivELERKEKEkaAEEHRRNaaeyrkflescDFIKvnSQWRKvqvrlED.DER
  838-  864 (37.90/15.26)	KEKERKREE.......EKARKEKE..REEKE......................KR........KEK
  866-  903 (66.58/32.32)	KDRDREREK.......GKERSKKE..DTDSENM...........DITD..SHGNK.....ED.KKR
  905-  939 (47.41/20.92)	KDRDRDRDR.........KHRKRH....QSATD...........DISS..DKDEK.....EDsKKR
  943-  966 (34.60/13.30)	SD....RKK...........SRKH..AYSPE...................SDGES.....RH.KKH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     198.16|      36|      38|     282|     317|       3
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  134-  151 (20.68/ 6.78)	...........................P...TAP....GP...GQPWLSSG...........IH.............................SA
  152-  194 (21.71/ 7.49)	P...PVAPgqqvgqpPS..AASSAD.......AA....TNVPST.......tqqsssdwqehTS.............................SD
  212-  276 (26.72/10.94)	P..VELMT.......PIerADASTVW.K...EYS....SP..DGRKYYYNK...........VTkqskwtipeelklareqaqkessqgmqseTG
  277-  311 (50.88/27.60)	...LASHG.......PV..AVGSSEM.P...SAG....TPVASGAPLVATG...........VA.............................SS
  312-  348 (41.72/21.29)	P..VAVTP.......VA..SLPNSSM.TisgSSA....TPGSQSA..VASA...........VA.............................VQ
  349-  393 (36.44/17.65)	PpmVTVTP.....lnPA..ISGSTGVsP...ALGnantTPVRTYDNRVSQD...........IA.............................SS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     139.57|      19|      45|      66|      84|       4
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   29-   43 (18.08/ 6.48)	....LGMHPAHSQ..PVQFSQ
   44-   62 (33.15/19.30)	QMQQYPPRPSQPG..HPMPSS
   66-   84 (37.27/22.82)	PMSYIQTRPIAPG..PPQSQQ
   88-  104 (22.25/10.02)	P..FTNQMP..PGgaMPFSSS
  109-  127 (28.82/15.62)	PSSFVQPQNNASS..VSQFQQ
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     188.64|      41|      45|     667|     707|       6
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  627-  660 (38.47/20.48)	KEEEEQKKIQK.EQLRRVE......................RKN..........RDEFRKLMEEhID
  667-  707 (68.09/42.29)	KTPWRDYCLKV.KDLPQYEAVASNTS..............GSTP..........KDLFEDVTEE.LE
  708-  771 (33.15/16.56)	.KQYHDDKARV.KDTLKLGKVSFESSwtfddfkaailediGSPPileinlklvyEELLERAKEK.EE
  797-  833 (48.92/28.17)	TSNWED.CRQLfEECQEYRAIGEE.................SVT..........RDIFEEYITH.L.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.90|      20|      21|     467|     486|       7
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  467-  486 (33.06/21.04)	D.KRYGALKTLGERKQAFNEY
  489-  509 (26.84/15.59)	QrKKLEAEERRMRQKKAREEF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33932 with Med35 domain of Kingdom Viridiplantae
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