<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33932

Description Pre-mRNA-processing factor 40-A-like protein
SequenceMVPNQHGQPFIPSSQQFQPVGQGIPPPNLGMHPAHSQPVQFSQQMQQYPPRPSQPGHPMPSSQGLPMSYIQTRPIAPGPPQSQQHAAPFTNQMPPGGAMPFSSSYSYAPSSFVQPQNNASSVSQFQQMSQMQAPTAPGPGQPWLSSGIHSAPPVAPGQQVGQPPSAASSADAATNVPSTTQQSSSDWQEHTSSDGRRYYYNKRTKQSVWDKPVELMTPIERADASTVWKEYSSPDGRKYYYNKVTKQSKWTIPEELKLAREQAQKESSQGMQSETGLASHGPVAVGSSEMPSAGTPVASGAPLVATGVASSPVAVTPVASLPNSSMTISGSSATPGSQSAVASAVAVQPPMVTVTPLNPAISGSTGVSPALGNANTTPVRTYDNRVSQDIASSVDGASILDIEEAKKGMAVAGKINVTPVEEKPVDDEPLVFANKQEAKNAFKSLLESANVQSDWTWEQAMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEFTIMLEESKELTSSTRWSKAVSMFENDERFKAVERARDREDLFESYIVELERKEKEKAAEEHRRNAAEYRKFLESCDFIKVNSQWRKVQVRLEDDERCLRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRVERKNRDEFRKLMEEHIDAAALTAKTPWRDYCLKVKDLPQYEAVASNTSGSTPKDLFEDVTEELEKQYHDDKARVKDTLKLGKVSFESSWTFDDFKAAILEDIGSPPILEINLKLVYEELLERAKEKEEKETKKRQRLADDFTKLLHSKKEITTTSNWEDCRQLFEECQEYRAIGEESVTRDIFEEYITHLQEKAKEKERKREEEKARKEKEREEKEKRKEKEKDRDREREKGKERSKKEDTDSENMDITDSHGNKEDKKREKDRDRDRDRKHRKRHQSATDDISSDKDEKEDSKKRKHSSDRKKSRKHAYSPESDGESRHKKHRRDHRDSRRNGGHEELEDGELGEDEEIQ
Length994
PositionUnknown
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.06
Grand average of hydropathy-1.129
Instability index59.25
Isoelectric point6.29
Molecular weight113097.34
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33932
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      27.02|       8|      21|     180|     189|       1
---------------------------------------------------------------------------
  180-  189 (11.73/12.38)	TQQSSsdWQE
  204-  211 (15.30/ 7.70)	TKQSV..WDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     211.03|      38|      38|     866|     903|       2
---------------------------------------------------------------------------
  542-  605 (24.55/ 7.33)	.ERARDREDlfesyivELERKEKEkaAEEHRRNaaeyrkflescDFIKvnSQWRKvqvrlED.DER
  838-  864 (37.90/15.26)	KEKERKREE.......EKARKEKE..REEKE......................KR........KEK
  866-  903 (66.58/32.32)	KDRDREREK.......GKERSKKE..DTDSENM...........DITD..SHGNK.....ED.KKR
  905-  939 (47.41/20.92)	KDRDRDRDR.........KHRKRH....QSATD...........DISS..DKDEK.....EDsKKR
  943-  966 (34.60/13.30)	SD....RKK...........SRKH..AYSPE...................SDGES.....RH.KKH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     198.16|      36|      38|     282|     317|       3
---------------------------------------------------------------------------
  134-  151 (20.68/ 6.78)	...........................P...TAP....GP...GQPWLSSG...........IH.............................SA
  152-  194 (21.71/ 7.49)	P...PVAPgqqvgqpPS..AASSAD.......AA....TNVPST.......tqqsssdwqehTS.............................SD
  212-  276 (26.72/10.94)	P..VELMT.......PIerADASTVW.K...EYS....SP..DGRKYYYNK...........VTkqskwtipeelklareqaqkessqgmqseTG
  277-  311 (50.88/27.60)	...LASHG.......PV..AVGSSEM.P...SAG....TPVASGAPLVATG...........VA.............................SS
  312-  348 (41.72/21.29)	P..VAVTP.......VA..SLPNSSM.TisgSSA....TPGSQSA..VASA...........VA.............................VQ
  349-  393 (36.44/17.65)	PpmVTVTP.....lnPA..ISGSTGVsP...ALGnantTPVRTYDNRVSQD...........IA.............................SS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     139.57|      19|      45|      66|      84|       4
---------------------------------------------------------------------------
   29-   43 (18.08/ 6.48)	....LGMHPAHSQ..PVQFSQ
   44-   62 (33.15/19.30)	QMQQYPPRPSQPG..HPMPSS
   66-   84 (37.27/22.82)	PMSYIQTRPIAPG..PPQSQQ
   88-  104 (22.25/10.02)	P..FTNQMP..PGgaMPFSSS
  109-  127 (28.82/15.62)	PSSFVQPQNNASS..VSQFQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     188.64|      41|      45|     667|     707|       6
---------------------------------------------------------------------------
  627-  660 (38.47/20.48)	KEEEEQKKIQK.EQLRRVE......................RKN..........RDEFRKLMEEhID
  667-  707 (68.09/42.29)	KTPWRDYCLKV.KDLPQYEAVASNTS..............GSTP..........KDLFEDVTEE.LE
  708-  771 (33.15/16.56)	.KQYHDDKARV.KDTLKLGKVSFESSwtfddfkaailediGSPPileinlklvyEELLERAKEK.EE
  797-  833 (48.92/28.17)	TSNWED.CRQLfEECQEYRAIGEE.................SVT..........RDIFEEYITH.L.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.90|      20|      21|     467|     486|       7
---------------------------------------------------------------------------
  467-  486 (33.06/21.04)	D.KRYGALKTLGERKQAFNEY
  489-  509 (26.84/15.59)	QrKKLEAEERRMRQKKAREEF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33932 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MVPNQHGQPFIPSSQQFQPVGQGIPPPNLGMHPAHSQPVQFSQQMQQYPPRPSQPGHPMPSSQGLPMSYIQTRPIAPGPPQSQQHAAPFTNQMPPGGAMPFSSSYSYAPSSFVQPQNNASSVSQFQQMSQMQAPTAPGPGQPWLSSGIHSAPPVAPGQQVGQPPSAASSADAATNVPSTTQQSSSDWQEHTSSDGRRYYYNKR
2) QEKAKEKERKREEEKARKEKEREEKEKRKEKEKDRDREREKGKERSKKEDTDSENMDITDSHGNKEDKKREKDRDRDRDRKHRKRHQSATDDISSDKDEKEDSKKRKHSSDRKKSRKHAYSPESDGESRHKKHRRDHRDSRRNGGHEELEDGELGEDEEIQ
3) TIPEELKLAREQAQKESSQGMQSETGLASHGPVAVGSSEMPSAGTPVASGAPL
4) VTVTPLNPAISGSTGVSPALGNANTTPVRTYDNRVS
1
834
251
352
203
994
303
387










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNKVTK
2) IPEELK
3) KSRKHAY
4) RHKKHRR
5) YYYNKR
236
252
947
962
198
246
257
953
968
203