<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33931

Description Uncharacterized protein
SequenceMDQNQRPSSASRAYQFHPGRAAIINLFDLYLGRSSRQKPDDATREPPNKTQKRVIALNRELPPRNEQFLIDFEQIQSQFSDQEQLRAVTESVLISLVVQCSSHAPRADFLLFALRSLCSIGYINWDSFLPSLLSSVSTAEMSVGQGTQSITAVSSQPGVLPSSSTITSSANFQSSNPASPLPSVHGIGSPAQSAIEPASCVTLSPVKSSDVSGAVQQSNSRVNSLIRDNAISSLRQLCCKIILAGLEFNLKPVTLADIFSYMLNWLVNWDQKQQGIDESDVAKSGRPDKSLIEWLHSCLDVIWLLVEEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTQRIISHITPNISGEAVTSLRYSPITYPSVLGEPLHGEDLATSIQKGSLDWERALRCIRHAFRSTPSPDWWKRVLLVAPCYRPPPHGSTPGAVFSSEMICEGTIDRIVELLKLTNSEINCWQEWRVFSDIFFFLIKSGCIDFVDFVDKLVSRVTEGDNNILRTNHVTLLIAEIIRVELVMNALNTDARKVETTRKILSFHREDRSSDPNSPQGILLDFISSCQNLRIWSLNTSTREYLNSEQLQKGKQIDEWWRQASKGDRMMDYMNMDDRSIGMFWVVSYTMAQPACETVMNWLSSAGVTELLPGANLQSNERLMVMRESLAQKNPSVLSKPGVTLLVLEILNYRLLPLYRYQGKSKALMYDVTKIISALKGKRGDHRSFRLAENLCMNLILSLREFFFVKREGKGPTEFTETLNRITIITLAIIIKTRGIADADHLLYLPTMLEQILGGSQHTWSEKTLRYFPSVLRDALIGRMDKRGLAIQAWQQAETTVINQCTQLLSPSADPTYVMTYISHSFPQHRQYLCAGAWILMQGHPESINSVNLARVLREFSPEEVTSNIYTMVDVLLHHMQLELQHGHSLQDLLMKASTNLAFFIWTHELLPLDILLLALIDRDDDPHALRIVISLLDRQELQPRVKLYCMNRGPPEHWLYNVMFKRMDLQKALGNHLSWKDRYPTFFDDIVARLLPVIPLIVYRLIENDAIDSAERILAKYSAFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPPLYNNSKSGSVCDASSSLLRATHSKNPATSQSGQTNASDSQKAFYQIQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQVIVNIQATLIQSSNGLGAPNGVAQGSVLPTSPSGGSTDSLGASRSTPSVPGMNTSNMVSRSGYSCQQLSCLMIQACGLLLAQLPPDFHIQLYIEASRIIKETWWLTDGKRSQGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHLIVKHLRPVQSVAMLRIVFRIMGPLLPRLANAHSLFSKTISLLLNILVDVFGKNSQPSNPPAEASEITDLIDFLHHVVHYEGQGGPVQPNSKPRTEVLALFGRASESLRPDIQHLLSHLRPDVHSSIYAATHPKLVQNPSSSVS
Length1545
PositionTail
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.08
Grand average of hydropathy-0.083
Instability index48.87
Isoelectric point6.54
Molecular weight172983.53
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33931
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     326.28|     119|     182|     190|     327|       4
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  190-  327 (186.41/204.35)	PAQSAIepaSCVTLSPVKSSDVSGAVQQ...........SNSRVNSLIRDN....AISSLRQLCCKIIlaglefnLKP.VTL..ADIFSYMLNWLVNWDQKQQGI..DESDVA...KSGRPD.KS..LIEWLhsCLDVIWLLVEedkcrvpFYELLRSG...LQFIE
  330-  387 (24.95/ 6.12)	PDDEAL...FTLILEIHRRRDMMAMHMQmldqhlhcptfGTQRIISHITPNisgeAVTSLR..........................................................................................................
  672-  779 (114.92/88.67)	.......................GANLQ...........SNERL.MVMRE........SLAQKNPSVL.......SKPgVTLlvLEILNYRLLPLYRYQGKSKALmyDVTKIIsalKGKRGDhRSfrLAENL..CMNLILSLRE.......FFFVKREGkgpTEFTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.64|      26|     182|    1028|    1066|       5
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 1028- 1054 (44.58/44.05)	LQKALGNHL...SW..KDRYPTFFDDIVArLL
 1355- 1385 (36.06/12.04)	LDSAVGYALldpTWaaQDNTSTAIGNIVA.LL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.12|      11|     111|    1401|    1412|       6
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 1401- 1412 (17.86/13.35)	HLIvKHLRP.VQS
 1515- 1526 (18.26/ 8.54)	HLL.SHLRPdVHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.12|      11|     182|     828|     843|       7
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  393-  403 (22.60/ 7.50)	YPSVLGEPLHG
  830-  840 (20.52/12.49)	FPSVLRDALIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.03|      43|     434|     853|     901|       9
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  853-  901 (71.75/53.15)	QQAETTVINQCTQLLSPSADPTYVMTYISHSfpqhrqYLCAGAWILMQG
 1306- 1348 (78.28/44.64)	QQLSCLMIQACGLLLAQLPPDFHIQLYIEAS......RIIKETWWLTDG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33931 with Med23 domain of Kingdom Viridiplantae
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