<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33929

Description Uncharacterized protein
SequenceMAGMEGVMVANQAQPPQQQQQQQQQQQQQQAIAVERLNDAVQQQLNLESVKTRALSLHKAISRTLEDLDVFARTNTTPKWQDILGQYSMVNMELFNIVDEIRKVSKAFVVHPKNVNAENSTILPVMLSSKLLPEMETDDNSKKELLLLGMQNLPVALQIEKLKARIDMIGAACESADKVLADTRKAYGFGARQGPPMVPTLDKGQAAKIQEQENLLRAAVNYGEGLRLPVDQRQVTPALPMHLVDVLTTNDGMQNFSEASGMYLKNNPMASNNLTGQGPLLQATGSQLLGRSAASPGAASTTTFDNTTTSPLPYANSPRSSATMMNTPSPQQQNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQSARQRQHQQQQQQQQQQRQKLMQLPQHQQQLLAQQQFRQSAMQGLGQNQLPQLHDLQGQSQQKFQSLHGQHQMQFSQPMGHQQFQSRQLPSGHVQHGIGQSQLNQGNQLNRHLSQFSSAANSALFNAAQTTTNPQMIPNMSATMSSPSLLPRISQFGLPGNNPQRTHASQILSDQMFNMGGNPGAMMPMQQQQQHGTQGAFGNMAPNAQSLQSSMATLQSNPQSHPNFAQQRQQNQQ
Length602
PositionHead
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.04
Grand average of hydropathy-0.858
Instability index65.07
Isoelectric point9.47
Molecular weight66994.15
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33929
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.04|      17|      17|     331|     347|       1
---------------------------------------------------------------------------
   12-   28 (34.77/ 8.12)	QAQPPQQQQQQQQQQQQ
  331-  347 (37.16/ 9.28)	QQQNQQQQQQQQQQQQQ
  348-  364 (35.11/ 8.29)	QQQQQQQQQQQQQQQQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.06|      23|      23|     371|     393|       2
---------------------------------------------------------------------------
  384-  403 (35.25/ 8.65)	QKLM.QLPQHQ....QQLLAQQQFR
  430-  451 (33.99/ 8.03)	QSL..H.GQHQmQFSQPMGHQQFQS
  577-  600 (32.83/ 7.46)	QSSMaTLQSNP.QSHPNFAQQRQQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.45|      18|      19|     539|     556|       3
---------------------------------------------------------------------------
  517-  535 (24.36/ 8.05)	RISQFGLPGNnPQRTHASQ
  538-  555 (35.69/15.29)	SDQMFNMGGN.PGAMMPMQ
  556-  573 (30.40/11.92)	QQQQHGTQGA.FGNMAPNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     202.48|      48|     183|     276|     330|       4
---------------------------------------------------------------------------
  204-  260 (61.55/23.73)	GQAAKIQEQ.ENLL.R......AAVNYGEGLRLPVD..QRQVTP.aLPMhlvdvltTNDGMqnfSEAS
  276-  323 (84.21/44.02)	GQGPLLQATGSQLLGR......SAASPGAASTTTFD..NTTTSP..LPY.......ANSPR...SSAT
  464-  513 (56.72/21.02)	GQSQ.LN.QGNQL.NRhlsqfsSAAN..SAL...FNaaQTTTNPqmIPN.......MSATM...SSPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.20|      16|      18|     118|     133|       5
---------------------------------------------------------------------------
  118-  133 (26.40/17.53)	ENSTILPVMLSSKLLP
  139-  154 (26.80/17.90)	DNSKKELLLLGMQNLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.37|      12|     348|      75|      86|       7
---------------------------------------------------------------------------
   75-   86 (24.45/12.26)	NTTPKWQDILGQ
  413-  424 (22.92/11.05)	NQLPQLHDLQGQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33929 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MEGVMVANQAQPPQQQQQQQQQQQQQQAIA
2) QNFSEASGMYLKNNPMASNNLTGQGPLLQATGSQLLGRSAASPGAASTTTFDNTTTSPLPYANSPRSSATMMNTPSPQQQNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQSARQRQHQQQQQQQQQQRQKLMQLPQHQQQLLAQQQFRQSAMQGLGQNQLPQLHDLQGQSQQKFQSLHGQHQMQFSQPMGHQQFQSRQLPSGHVQHGIGQSQLNQGNQLNRHLSQFSSAANSALFNAAQTTTNPQMIPNMSATMSSPSLLPRISQFGLPGNNPQRTHASQILSDQMFNMGGNPGAMMPMQQQQQHGTQGAFGNMAPNAQSLQSSMATLQSNPQSHPNFAQQRQQNQQ
4
254
33
602










Molecular Recognition Features






MoRF SequenceStartStop




NANANA