<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33926

Description Transcription elongation regulator 1
SequenceMTTPAPNVGSTSSWGPPAAFTMPPGTPGAPGTPGPPGILQSTHISSNITVGPVAVDTSLTVQRPIMPSPMGAMASNSAVQQQIGVPYQSLPSMAAPPQGPWLQPSPQMGGVPRLPNLLYHAAFPGPFPSMARGIPPSVPGPDSQPPGIAPVGNTRLTPTPFAASVQPVVAGSSGTRMELHTSDEQTHVRDVRSQVSADVNEQSDAWTAHKTEAGVVYYYNTLTGESTYDKPPGFKGEPEKVSVQPVPVSMVNLPGTDWVLVSTSDGKKYYYNNKTKVSSWQIPNEVTELRKKQESDIPKENSTSVPNNNVLAEKGSTPINLNAPAINTGGRDAMALRSTSAQGSSSALDLIKKKLQEFGTPVTSSSGQVQPGIAASESNGSRAVEPTAKGQQSESSKDKPKDANGDRNMTDSSSDSEDADSGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSLRRSLFEHYVKTRVEEERKEKRAALKAAIEGFKKLLDEASEDIDHKTYYQTFRKKWGDDPRFLALDRKDREHLLNERVLPLKRATEEKAQAIRAAAASNFKSMLREKGDVTVNSRWSRVKESLRDDPRYKSVKHEDREVLFNEYLSDLRAAEEEVEREAKAKRDEQDKLKERERELRKRKEREEQEMERVRIKVRRKEAVVSFQALLVETIKDPQASWTESKSKLEKDPQGRASNPDLDSSEMEKLFREHIKTLQERCAREYKALLAELLTADAAERETDDGKTVLNSWSTAKRLLKPDPRYNKMPRKDRETLWRRYAEDMLRKQQKSEPNSKEDKKIDPRNRTSVDSGRLPSGLRGTHERR
Length829
PositionUnknown
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.06
Grand average of hydropathy-0.886
Instability index51.77
Isoelectric point9.11
Molecular weight92370.68
Publications

Function

Annotated function
GO - Cellular Component
GO - Biological Function
GO - Biological Process

Interaction

Binary Interactions

Repeat regions

Repeats

>MDP33926
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     436.47|     106|     109|       6|     111|       1
---------------------------------------------------------------------------
    6-   98 (158.95/80.62)	................PNVG.......STSSW.GP.P.........A.AFTMPP......GTPGAP.............GTPG..PPGI..LQST......HISSNITVGPVAVDTSLTVQRPIMPSPMGAMASNSAVQQQIGV.PYQSLP.SMAAPPQ
   99-  202 (134.82/67.25)	GPWLQPSPQMGGVprlPNLL.......YHAAFpGPfP.........SmARGIPP......SVPG.P.............DSQ...PPGIapVGNT......RL....TPTPFA..AS..VQ.PVVAGSSGTRMELHTSDEQTHVrDVRSQV.SADVNEQ
  204-  323 (109.43/53.19)	DAWTAHKTEAGVV........................yyyntltgeS.TYDKPP......GFKGEPekvsvqpvpvsmvNLPG..TDWV..LVSTsdgkkyYYNNKTKVSSWQIPNEVTELRKKQESDIPKENSTSVPNNNVLA.EKGSTPiNLNA...
  324-  388 (33.26/10.99)	.....PAINTGG........rdamalrSTSAQ.GS.S.........S.ALDLIKkklqefGTP.VT.............SSSGqvQPGI..AASE......SNGSR.AVEPTA..............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     425.08|      64|      66|     480|     543|       2
---------------------------------------------------------------------------
  429-  479 (53.01/24.16)	.........................IIQFKEMLKE..RGVAP.FS...KWEKELPKIVFDPRFKAipsysLRRSLFEHYVKT
  480-  543 (105.06/54.56)	RV...EEERKE.KRAAL....KAA.IEGFKKLLDEASEDIDH.KT...YYQTFRKKWGDDPRFLA.....LDRKDREHLLNE
  544-  610 (83.18/41.78)	RVlplKRATEE.KAQAI....RAAaASNFKSMLRE.KGDVTV.NS...RWSRVKESLRDDPRYKS.....VKHEDREVLFNE
  616-  645 (42.36/17.93)	RA...AEEEVE.REA......KA......KR..DEQD..................K......L..........KERERELRK
  646-  716 (74.84/36.91)	RK...EREEQEmERVRIkvrrKEA.VVSFQALLVETIK..DP.QA...SWTESKSKLEKDPQGRA.snpdLDSSEMEKLFRE
  721-  780 (66.63/32.11)	LQ...ERCARE.YKALL....AEL.LTA.....DAAERETDDgKTvlnSWSTAKRLLKPDPRYNK.....MPRKDRETL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.44|      10|      14|     394|     404|       3
---------------------------------------------------------------------------
  394-  404 (13.87/ 8.86)	ESSKDkPKDAN
  411-  420 (17.58/ 7.11)	DSSSD.SEDAD
---------------------------------------------------------------------------




Explaination for Stockholm format The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space.

#=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00)

#=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.

#=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.

Alignment of MDP33926 with Med35 domain of Kingdom Viridiplantae

Intrinsically Disordered Regions

IDR SequenceStartStop
1) ERETDDGKTVLNSWSTAKRLLKPDPRYNKMPRKDR
2) LWRRYAEDMLRKQQKSEPNSKEDKKIDPRNRTSVDSGRLPSGLRGTHERR
3) MTTPAPNVGSTSSWGPPAAFTMPPGTPGAPGTPGPPGILQSTHISSN
4) QIPNEVTELRKKQESDIPKENSTSVPNNNVLAEKGSTPINLNAPAINTGGRDAMALRSTSAQGSSSALDLIKKKLQEFGTPVTSSSGQVQPGIAASESNGSRAVEPTAKGQQSESSKDKPKDANGDRNMTDSSSDSEDADSGPTKEECI
5) SMARGIPPSVPGPDSQPPGIAPVGNTRLTPTPFAASVQPVVAGSSGTRMELHTSDEQTHVRDVRSQVSADVNEQSDAW
6) SWTESKSKLEKDPQGRASNPDLDSSEMEKL
7) TVGPVAVDTSLTVQRPIMPSPMGAMASNSAVQQQIGVPYQSLPSMAAPPQGPWLQPSPQMGG
743
780
1
281
129
684
49
777
829
47
429
206
713
110

Molecular Recognition Features

MoRF SequenceStartStop
1) LIKKKL
2) LWRRYAEDMLRKQ
350
780
355
792