<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33926

Description Transcription elongation regulator 1
SequenceMTTPAPNVGSTSSWGPPAAFTMPPGTPGAPGTPGPPGILQSTHISSNITVGPVAVDTSLTVQRPIMPSPMGAMASNSAVQQQIGVPYQSLPSMAAPPQGPWLQPSPQMGGVPRLPNLLYHAAFPGPFPSMARGIPPSVPGPDSQPPGIAPVGNTRLTPTPFAASVQPVVAGSSGTRMELHTSDEQTHVRDVRSQVSADVNEQSDAWTAHKTEAGVVYYYNTLTGESTYDKPPGFKGEPEKVSVQPVPVSMVNLPGTDWVLVSTSDGKKYYYNNKTKVSSWQIPNEVTELRKKQESDIPKENSTSVPNNNVLAEKGSTPINLNAPAINTGGRDAMALRSTSAQGSSSALDLIKKKLQEFGTPVTSSSGQVQPGIAASESNGSRAVEPTAKGQQSESSKDKPKDANGDRNMTDSSSDSEDADSGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSLRRSLFEHYVKTRVEEERKEKRAALKAAIEGFKKLLDEASEDIDHKTYYQTFRKKWGDDPRFLALDRKDREHLLNERVLPLKRATEEKAQAIRAAAASNFKSMLREKGDVTVNSRWSRVKESLRDDPRYKSVKHEDREVLFNEYLSDLRAAEEEVEREAKAKRDEQDKLKERERELRKRKEREEQEMERVRIKVRRKEAVVSFQALLVETIKDPQASWTESKSKLEKDPQGRASNPDLDSSEMEKLFREHIKTLQERCAREYKALLAELLTADAAERETDDGKTVLNSWSTAKRLLKPDPRYNKMPRKDRETLWRRYAEDMLRKQQKSEPNSKEDKKIDPRNRTSVDSGRLPSGLRGTHERR
Length829
PositionUnknown
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.06
Grand average of hydropathy-0.886
Instability index51.77
Isoelectric point9.11
Molecular weight92370.68
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33926
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     436.47|     106|     109|       6|     111|       1
---------------------------------------------------------------------------
    6-   98 (158.95/80.62)	................PNVG.......STSSW.GP.P.........A.AFTMPP......GTPGAP.............GTPG..PPGI..LQST......HISSNITVGPVAVDTSLTVQRPIMPSPMGAMASNSAVQQQIGV.PYQSLP.SMAAPPQ
   99-  202 (134.82/67.25)	GPWLQPSPQMGGVprlPNLL.......YHAAFpGPfP.........SmARGIPP......SVPG.P.............DSQ...PPGIapVGNT......RL....TPTPFA..AS..VQ.PVVAGSSGTRMELHTSDEQTHVrDVRSQV.SADVNEQ
  204-  323 (109.43/53.19)	DAWTAHKTEAGVV........................yyyntltgeS.TYDKPP......GFKGEPekvsvqpvpvsmvNLPG..TDWV..LVSTsdgkkyYYNNKTKVSSWQIPNEVTELRKKQESDIPKENSTSVPNNNVLA.EKGSTPiNLNA...
  324-  388 (33.26/10.99)	.....PAINTGG........rdamalrSTSAQ.GS.S.........S.ALDLIKkklqefGTP.VT.............SSSGqvQPGI..AASE......SNGSR.AVEPTA..............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     425.08|      64|      66|     480|     543|       2
---------------------------------------------------------------------------
  429-  479 (53.01/24.16)	.........................IIQFKEMLKE..RGVAP.FS...KWEKELPKIVFDPRFKAipsysLRRSLFEHYVKT
  480-  543 (105.06/54.56)	RV...EEERKE.KRAAL....KAA.IEGFKKLLDEASEDIDH.KT...YYQTFRKKWGDDPRFLA.....LDRKDREHLLNE
  544-  610 (83.18/41.78)	RVlplKRATEE.KAQAI....RAAaASNFKSMLRE.KGDVTV.NS...RWSRVKESLRDDPRYKS.....VKHEDREVLFNE
  616-  645 (42.36/17.93)	RA...AEEEVE.REA......KA......KR..DEQD..................K......L..........KERERELRK
  646-  716 (74.84/36.91)	RK...EREEQEmERVRIkvrrKEA.VVSFQALLVETIK..DP.QA...SWTESKSKLEKDPQGRA.snpdLDSSEMEKLFRE
  721-  780 (66.63/32.11)	LQ...ERCARE.YKALL....AEL.LTA.....DAAERETDDgKTvlnSWSTAKRLLKPDPRYNK.....MPRKDRETL...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.44|      10|      14|     394|     404|       3
---------------------------------------------------------------------------
  394-  404 (13.87/ 8.86)	ESSKDkPKDAN
  411-  420 (17.58/ 7.11)	DSSSD.SEDAD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33926 with Med35 domain of Kingdom Viridiplantae
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