<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33923

Description U-box domain-containing protein 33
SequenceMELLRPSSPPTHAHSPVSLYGFSFPATSRRGLDRAGTSQLPEIVEEEGNNNKVHVALGKSEEKAMSLLNWTFRRFQGKEICILHVHLPSQLIPTLLGNLPATQASAEVVSTYRKFEKEQMSKLLQRYSNFCSRAKVNASIITIEAEQVQKGIVDLVNENGIRKLVMGAVPENCMKVKKGSSKANYAAKKAPLFCEIWFIHKGKHVWTRDTPEDPSSLPSCSLPQIATAENSRSRSFQYGKNKSIHPDCLQSKSAKSAVCTQISNRVQYEPVHAELASSPTLSRSACTCLHDLNDSSSTTSSSSCSGYNSAERRGLSDSDLKVGEERLYSQLIQATIEAETSSNEACADSLKVKKLELEAREAISKVKAFESALACEGQLRKEAEEALRTTLEEQEKLLEERDDITQELHRTMRNVALLDSRAQEANRRHDEAVGELKLVQESIATLRQEKQRIRRPKIEALRWLERWRSHGQGGATNYDGLVGSVKELHELAEFSLPDLQTATCNFSESFILCQEGYGYVYKGEMMGRTVAIRKLYPYNMQGESEFQQEVKVLGKLQHPHLVTLLGVCPEAWSLVYEYLPNGGLQNHLFRKSNVLTWEIRVRIIAEIASALCFLHSSKPEKIVHGDLTPRKILLDSELRCKICDFGICRSITEDNLQCPSLRWNTGPKGSFYYTDPEFQRIGILTPKSDAYSFGLIVLQLLTRRSPVGLAGEVRKAVSSGKLASILDSSAGEWPMLVARRLADIGLQCCKLNSRDRPDLTPSLVRELEQLHDSEERPVPSFFLCPILQEIMHDPQVAADGFTYEGEAMRGWLQNGKETSPMTNLKLSHLNLTPNHAIRLAIQDWLCKA
Length848
PositionTail
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.06
Grand average of hydropathy-0.408
Instability index54.37
Isoelectric point7.73
Molecular weight94967.20
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33923
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     239.61|      71|     134|     575|     659|       1
---------------------------------------------------------------------------
  575-  648 (120.89/78.19)	VYEYLPNGGLQNHLfrKSNVLTWEIRV.RIIAEIASALCFLHS.SKPeKIVHGDLTP...RKI..LLDSELRCKICDFGIC
  713-  784 (99.15/53.55)	VRKAVSSGKLASIL..DSSAGEWPMLVaRRLADIGLQCCKLNSrDRP......DLTPslvRELeqLHDSEER.PVPSFFLC
  825-  846 (19.57/18.82)	................................................KLSHLNLTP..........NHAIRLAIQDW.LC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     584.11|     201|     281|       4|     236|       2
---------------------------------------------------------------------------
    4-  236 (288.60/308.55)	LRPSSPPThahSPVSLYGFSfpATSRRGLdraGTSQLpEIVEEEGNNNKVHV...ALGKSEEK.AMSL....LNwtfrrFQGKEiCILHVH.LPSQLipTLLGNL..PATQAsaevvstYRKFEKEQmSKLLQRYSNFCS...RAKVNASIITIEAEQVQKGIVDLVNEngiRKLVMgavpENCMKVKKGSSKANYAAKKAPLFCEIWFIHKGKHVWT....RDTPEDPSSLPSCSLPQIATAENSRSRSF
  292-  510 (295.51/220.15)	LNDSSSTT...SSSSCSGYN..SAERRGL...SDSDL.KVGEERLYSQLIQAtieAETSSNEAcADSLkvkkLE.....LEARE.AISKVKaFESAL..ACEGQLrkEAEEA.......LRTTLEEQ.EKLLEERDDITQelhRTMRNVALLDSRAQEANRRHDEAVGE...LKLVQ....ESIATLRQEKQRIRRPKIEALRWLERWRSHGQGGATNydglVGSVKELHELAEFSLPDLQTATCNFSESF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33923 with Med32 domain of Kingdom Viridiplantae
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