<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33922

Description Uncharacterized protein
SequenceMNQNQVPGSKDAEEAEPAAQSLEDSDKADADEDAVETPAGDPMEEDSVSPAAVFCIRLKQPRSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANTPFWIPIHIVIPERPTECQVFNVVADSPRDSVQFIEWSPTSSPRALLIANFHGRVTIWTQPSQGPTNLVRDATSWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSSTSNSKSTFEEKFLSQHSQNSARWPNFLCVCSVFSSGSVQLHWSQWPPNQSSSPAKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVSPGPGNGFQTIPKTATSNGVPPSINPPAWAGFSPLAAYLFSWQEYLLSETKNEKKQTDPNVNDVVQLHCSPVSNFSAYVSPEAAAQSATTTTWGSGVTAIAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPPTNDFKFHQAAATGPTSDVKKTSDSSVEKAKRVSFDPFDLPSDVRTLARIVYSAHGGEIAAAFLRGGVHIFSGPNFSAVDNYQINVGSAIAAPAFSSTSCCSASVWHDTCKDRTLLKIIRVLPPAVPSSQEKANSSTWERAIAERFWWSLMVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVPEPWQASGETLSGIDPEAMAVEPALASSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGAGSNRNMVASPTQNAASPATNQGGQSGTTNSTGSTQMQAWVQGAIAKISSTTDGVSSSAPNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQLPRFSGGAQRNADANMQKPQAGPPGKVEEIGSAPAKPSSVVRPDENQAARAGQIIPGAKGVEEGTAGRSRLGTGNAGQGYTFEEV
Length1003
PositionTail
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.08
Grand average of hydropathy-0.209
Instability index42.86
Isoelectric point5.80
Molecular weight107321.07
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33922
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     222.89|      55|     114|     784|     841|       1
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   54-  108 (41.97/16.08)	.FCIRLKQPRSnllhkmsvpeLCRNF..S..AV.AWCG.KLNAIACasetcariPSSNANTP................
  784-  841 (94.60/52.49)	HFITRLRRYAS..........FCRTL..ASHAVTAGAGSNRNMVAS........PTQNAASPatnQGGQSGTTNSTGS
  899-  950 (86.32/42.27)	HFLHRLCQLLL..........FCFFFrrAQLPRFSG.GAQRNADA............NMQKP...QAGPPGKVEEIGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     380.72|     100|     112|     194|     303|       2
---------------------------------------------------------------------------
  124-  209 (91.36/42.25)	.................................CQ.VFNvvadSPRDSVQFI.....EWSP..TSSPrALLIANFHGrvTIWTQPS..QGPTNLVR...DATSWQREHEW.....................rqdiavVTKWLSGVSPYRWLSS
  210-  325 (158.75/100.08)	KSSSTSNSkstfeekflSQHSQNSARWPNFLCVCS.VFS....SGSVQLHWS.....QWPPNqSSSP.AKWFCTSKG..LLGAGPSGIMAADAIIT...DSGAMHVAGVP.....................ivnpstVVVWEVSPGPGNGFQT
  327-  458 (130.62/66.84)	PKTATSNG.........VPPSINPPAWAGFSPLAAyLFS....WQEYLLSETknekkQTDPN.VNDV.VQLHCSPVS..NFSAYVSPEAAAQSATTttwGSGVTAIAFDPtrggsviavvivegqymspydpdegpsITGW....RVQRWESS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.07|      10|      18|     736|     745|       5
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  736-  745 (18.55/10.35)	VNPSALVPEP
  756-  765 (18.52/10.33)	IDPEAMAVEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.23|      18|      19|     685|     703|       9
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  685-  703 (28.78/21.26)	TQHRQQYGPSLDrIKCRLL
  706-  723 (29.45/16.87)	TNAQEVRAMVLD.MQARLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33922 with Med16 domain of Kingdom Viridiplantae
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