<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33920

Description Uncharacterized protein
SequenceMKTLIHAGTSDVCWYHKIVLRFNRHWYIMCKLLSCLVQRSGWTRDIDNYLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPSMQNGNQSQPNMDCQRHCILISASNPHPLSTPVFRPQVQNLEQSENIDGQTENRLSDAETIAKSFAQCLVSLSVISPKQLPKLRAIYNAGKCNPRANDPPIDNAKNPYFLVLLSENFLEARAAFRVPSLPSNQSPVKMDMASVPSVTGPPPTSMPSVNGSVMNRQPISVGNMPPATVKVNGFDLINKSSGAKYCKFHGFWTHFSTHSVCCSCCFPRSPVADFFTIFCSQDMISNNENGPDLKPIVSSLSQPLRPVGPAPANVNILNNLSAKRQVINSAALPMGQTPIGMHMSNMISSGMASSTPAQNTLPSGQPAITSLPGSGPLTQVTQTPGLSTFSAATSNVSGNSNIGVSQPMNNLQGGVSMGQSVPTMSQGNISGAQMVQTGMGMNQNMISGLGQSVVSSGTGTMMPTPGMSQQVQSGMQPLGVNNNSAASIPMSQQASTAPQASKYVKVWEGYRNATASETQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAYRLIGMLFPGVRFL
Length607
PositionUnknown
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.06
Grand average of hydropathy-0.144
Instability index48.58
Isoelectric point9.08
Molecular weight65122.89
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33920
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.67|      21|      26|     360|     384|       2
---------------------------------------------------------------------------
  360-  384 (33.88/22.32)	LPMGQTPIgmhmSNMISSG...MASSTP
  389-  412 (31.79/12.76)	LPSGQPAI....TSLPGSGpltQVTQTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     160.55|      37|      38|      80|     116|       4
---------------------------------------------------------------------------
   80-  116 (74.17/44.98)	PSMQNGNQSQPNMDCQRHCIL.....ISASNPHPL.STPVFRP
  118-  157 (39.59/20.28)	..VQNLEQSE.NIDGQTENRLsdaetIAKSFAQCLvSLSVISP
  207-  235 (46.78/25.41)	PSLPS.NQSPVKMDMAS...V.....PSVTGPPPT.SMP....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.57|      12|      31|     436|     449|       5
---------------------------------------------------------------------------
  436-  449 (19.96/14.89)	MN.NLQGGvsMGQSV
  469-  481 (19.60/ 8.44)	MNqNMISG..LGQSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33920 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSNMISSGMASSTPAQNTLPSGQPAITSLPGSGPLTQVTQTPGLSTFSAATSNVSGNSNIGVSQPMNNLQGGVSMGQSVPTMSQGNISGAQMVQT
371
465










Molecular Recognition Features






MoRF SequenceStartStop




NANANA