<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33919

Description U-box domain-containing protein 32
SequenceMAQRSWGCADKGGGFPRQGTTARMGWIMRLSDKEMRRGWAAVQAPIVGDQRWRPCCGDGRRWRSGGVATVTSDGVVWLQRLLKWLGYGGRDVKGRGSGDGRQAQGLGCRQEASEAKAFQSLYVKEISQKKEIEETLGKVKQELERVKDERDEFIGEIQMAQENNLVLEGQVAKSQEEIKELEEKIISAVKLLISFKEKRDKLRTEHGNAVREVEWLRRLMKGDATSFSRSEFPVFSFLEINEATNDFDPSWKIAEGRYGTVYKGILRQMHVAIKMLPSYGFKSQSDFQREVEIISRFRHPNVATLIGMCPESRSLVYEYLKKGSLEDCLSGKNNTIPWQIRTSIAAEICSALIFLHSNKPCIVHGNVKPSNILLDANYVSKLGDLGIISLIEKNDLANSTTISNHSDRTSVYMDPGYLETGELRAESDVYSFGVILLRLLTARPLQGLVKDVRCALENNNLNAVLDFPAGDWPLEQAKRLAQLAIRCCNKNWLDRPDLATDVWGVLEPMRASCIASTSFLVSKKLQRTPSHFVCPILQEIMKDPQIAADGFTYEAEAIRGWLHSGHNTSPMTNLKLDHCNLVPNYALQNAIQEWQLQQ
Length598
PositionTail
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.08
Grand average of hydropathy-0.394
Instability index42.97
Isoelectric point8.40
Molecular weight67384.28
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33919
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.33|      30|      30|     125|     154|       2
---------------------------------------------------------------------------
  106-  123 (19.46/ 8.82)	...........L.G.CRQEASEAKAFQSLYV
  125-  154 (45.62/29.89)	EISQKKEIEETL.GKVKQELERVKDERDEFI
  156-  186 (40.26/25.57)	EIQMAQENNLVLeGQVAKSQEEIKELEEKII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.86|      36|      92|     290|     326|       3
---------------------------------------------------------------------------
  290-  325 (63.18/45.86)	EVEIISRFRHPNVATLIGMCPES.RSLVY...EYLKKGSL
  384-  423 (50.68/30.80)	DLGIISLIEKNDLANSTTISNHSdRTSVYmdpGYLETGEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.80|      14|      30|      51|      66|       4
---------------------------------------------------------------------------
   51-   64 (32.44/20.66)	RWRPCCGDGRRWRS
   83-   96 (23.35/ 7.17)	KWLGYGGRDVKGRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.69|      19|     205|     354|     378|       7
---------------------------------------------------------------------------
  354-  378 (26.89/28.78)	FLHSNkpcivHgNVKP.SNILLD.....ANY
  561-  585 (29.80/14.85)	WLHSG.....H.NTSPmTNLKLDhcnlvPNY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33919 with Med32 domain of Kingdom Viridiplantae
Unable to open file!