<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33905

Description Uncharacterized protein
SequenceMDNNNWRPIQGGEPAMDAVDWRTQLQPDSRQRIVNKIMDTLKKHLPFSGQEGLHELKKIAERFEEKIYTAATSQSDYLRKISLKMLTMETKSQNSIPNSLPTNPVSNNNRPPDPGSLGMQSQIHNQGQSLAMPLQPNQSQTRPQLLPQNIQNSGGVQSSSTLSPALPPPSSLSQTSIPSVVGQNPNMQNMPGTSQNTVGNSMGQGVPANMYASSQRQVHGRPQVVPQQQQQSQNAQQYNMYQQQQLLKPKFQQGNIPQPMMQSHMQQQQQPNLLQPTQLQSSQQAVIQTSAAMQPNMMQSSLSGLQPNQPSSVQQSKPMLQQHQQSVLRQQQQPQQAAVAHQQQTQMPQQQILPQQQQQQQQPQQQLMGQQPNSTSMQQTHLIGQQNNIGDIQQQQQQRLLVQQNNLSNLQQQQQQQQLMAQQNNLSNLHQQQLGSQGNVTGLHHQQQLLGTQTGNSSMQTNQHSLHMLQQSKPSLQQQPQQSASNLLPTQAQQSQPQPPQQQMLSQIQSQPTQIQPPLSMQPNPLQRDMPQRLQASGQTSGSLLQTQNVIDQQKQQLYQSQRAPPETSSTSLDSTAQTGHANVSDDEVYQKIKAMKEQYLPELNEMYQKIAAKLQQACPFFYLLQFIYTNKFASIFGNFRLIQDSLPQQPKSDQYEKIKLFKTMLERAITFLQVPKGSILPGYKDKLAHYEKQIVNFINTHRPRKPVSQLQQGQVSSTHMHTMQQPQSQIAQVHSHENQMNPQLQSMNAQGSVATMQQNNMTSLQQSSISTLSGVSTPQQNVMNSLQPNSNMDSGQGNSLNSLQQVSVGSMQQNPVSAPPQGNINALSSQNGMNVLQSSINTLQPNSGMLQHQHIKQQQEQQMLQTQQLKQQLHQRQIQQQLLQKQQILQQQQQQQQQQQQQQQQQLQQQPKQQLPAQLQTHQNQISQLHQMNDVNDMKMRQNMAVKPGVFQQHVPAGQRSAYPHQQLKTGSPFSVPSNHLQASSPQVLQHSSPQVDQQNLLSSLTKAGTPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVPGISSLPNAGNVGQQQASGGVAPAPSLAIGTPGISASPLLAEFSSPDGIHGNVLSSVSGKSSVTEQPLGRLIKAVKSMSPTALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQVRNFITQDGTNGTRKMKRYTSAMPLNVVSSASSINDSFKQFNGSETSELESTATSGIKRPKIEANHALLEEIREINQRLIDTVVDISDEDVDPSAAAAAVEGGEGTIVKCSFSAVALSPNLKSQYASARMSPIQPLRLLVPTNYPNCSPILLDKFPVEISKEYEDLSVKAKSKFSTFLRSLSQPMSLGAIARTWDVCARAVISEHAQQSGGGSFSSKYGTWENCLSAS
Length1396
PositionTail
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.03
Grand average of hydropathy-0.754
Instability index71.00
Isoelectric point9.42
Molecular weight153799.63
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33905
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     295.36|      53|      53|     226|     278|       4
---------------------------------------------------------------------------
  200-  248 (71.51/16.31)	NSMGQG...VPA..NMYASSQR....QVHG....RPQVvPQQ.....QQ...QSQNAQQYNMYQQQQL..LK
  249-  306 (77.07/18.38)	PKFQQGN..IPQ..PMMQSHMQ....QQQQPNLLQPTQlQSS.....QQaviQTSAAMQPNMM.QSSLsgLQ
  307-  354 (52.31/ 9.14)	PN.QPSS..VQQskPMLQQHQQsvlrQQQQ.........PQQaavahQQ...QTQ......M.PQQQI..LP
  452-  489 (46.87/ 7.12)	T..QTGNssMQT..NQHSLHML....QQSKPSLQQ.................QPQQSAS.......NL..LP
  709-  742 (47.59/ 7.38)	SQLQQGQ..VSS......THMH....TMQQP.....................QSQIAQVHSHENQ.....MN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.83|      34|      36|     118|     152|       6
---------------------------------------------------------------------------
  120-  156 (49.99/15.80)	QSQIHNQGQSLAMPLQPNQ...S....QTrPQLLPQ..N.IQNsgGV
  356-  389 (41.63/ 9.35)	QQQQQQQPQQQLMGQQPNStsmQ....QT..HLIGQqnN.I......
  493-  530 (41.21/ 9.16)	.QQSQPQPPQQQMLSQIQS...QptqiQP.PLSMQP..NpLQR..DM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.76|      24|      29|     965|     989|       7
---------------------------------------------------------------------------
  902-  925 (36.25/11.26)	QQ.............QQQQLQQQPKQQLPA.QLQTHQN
  950-  987 (28.51/10.29)	GVfqqhvpagqrsayPHQQLKTGSPFSVPSnHLQASSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.55|      13|      16|     822|     834|       8
---------------------------------------------------------------------------
  751-  762 (22.19/10.29)	QGSVATMQQNN.M
  822-  834 (23.26/11.27)	QGNINALSSQNGM
  838-  850 (27.10/14.77)	QSSINTLQPNSGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     139.58|      29|      29|    1072|    1100|       9
---------------------------------------------------------------------------
 1010- 1035 (34.69/15.93)	GTPLQSAnSPFVV................PSPSTPLA.............P..S.PMP
 1072- 1100 (52.04/28.20)	GTPGISA.SPLLAE..............FSSPDGIHG.............NVLS.SVS
 1101- 1130 (30.28/12.81)	GKSSVTE.QPLGRL..............IKAVKSMSP.............TALSaSVS
 1145- 1200 (22.58/ 7.37)	SAPGNGS.RAAVGEdlvamtkcrlqvrnFITQDGTNGtrkmkrytsamplNVVS.SAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.14|      16|      16|     587|     602|      10
---------------------------------------------------------------------------
  587-  602 (29.69/19.21)	DEVYQKIKAMKEQYLP
  605-  620 (30.46/19.91)	NEMYQKIAAKLQQACP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.61|      12|      99|      85|      96|      12
---------------------------------------------------------------------------
   85-   96 (21.88/11.45)	MLTMETKSQNSI
  187-  198 (22.73/12.23)	MQNMPGTSQNTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.66|      13|      20|      27|      45|      14
---------------------------------------------------------------------------
   16-   31 (20.33/19.21)	MDAVDWRTqlqPDSRQ
   38-   50 (24.33/ 8.11)	MDTLKKHL...PFSGQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33905 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KPVSQLQQGQVSSTHMHTMQQPQSQIAQVHSHENQMNPQLQSMNAQGSVATMQQNNMTSLQQSSISTLSGVSTPQQNVMNSLQPNSNMDSGQGNSLNSLQQVSVGSMQQNPVSAPPQGNINALSSQNGMNVLQSSINTLQPNSGMLQHQHIKQQQEQQMLQTQQLKQ
2) LTMETKSQNSIPNSLPTNPVSNNNRPPDPGSLGMQSQIHNQGQSLAMPLQPNQSQTRPQLLPQNIQNSGGVQSSSTLSPALPPPSSLSQTSIPSVVGQNPNMQNMPGTSQNTVGNSMGQGVPANMYASSQRQVHGRPQVVPQQQQQSQNAQQYNMYQQQQLLKPKFQQGNIPQPMMQSHMQQQQQPNLLQPTQLQSSQQAVIQTSAAMQPNMMQSSLSGLQPNQPSSVQQSKPMLQQHQQSVLRQQQQPQQAAVAHQQQTQMPQQQILPQQQQQQQQPQQQLMGQQPNSTSMQQTHLIGQQNNIG
3) MDNNNWRPIQGGEPAMDAVDWRTQLQPDSRQRIVNKIMDTL
4) PLQSANSPFVVPSPSTPLAPSPMPGDSDKPVPGISSLPNAGNVGQQQASGGVAPAPSLA
5) QKQQLYQSQRAPPETSSTSLDSTAQTGHANVSDDE
6) QQQQQQQQLMAQQNNLSNLHQQQLGSQGNVTGLHHQQQLLGTQTGNSSMQTNQHSLHMLQQSKPSLQQQPQQSASNLLPTQAQQSQPQPPQQQMLSQIQSQPTQIQPPLSMQPNPLQRDMPQRLQASGQTSGSLLQT
7) QQQQQQQQQQQQQQLQQQPKQQLPAQLQTHQNQISQLHQMNDVNDMKMRQNMAVKPGVFQQHVPAGQRSAYPHQQLKTGSPFSVPSNHLQASSPQVLQHSSPQVDQQNLLSSLTKAG
706
86
1
1012
554
411
894
872
390
41
1070
588
547
1010










Molecular Recognition Features






MoRF SequenceStartStop




NANANA