<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33898

Description U-box domain-containing protein 35
SequenceMAPQPYPDDSIPAVNSTAVAIEKDNKNSKAAVRWAVEHLVGGNPFIILIHVRHKNHRSYAESTSHGDTYDSDVHSIFAPFRGYCARKAIQMKEVLLDDFDVSKAIMDYVNKNCITNVVAGASTKNSITRKFKSVDVPTSLVKSAPDFCSVYVISKGKLISARNAQRLALNTAAPPKQPSPHGLPPYINPTDHGEVDHASRLQLTRGVIVRNGGGSEKMVPGRERARSVPSLSLDIIDIPSTSRPSFCRDSTAEESDFVAAFGTFGSIDVTGQNLDFGASTTSPRNSSTRHSAREIDAEMKRLKLELKQTMDMYSSACKEAISAKNKAKELSQWKLEESRKFEEARLAEETALAAAEMEKAKCKAAIEAAEMAQRMAEKEAQRRKHAEMRARREAEEKNRVLTALSKNEFRYRKYTIEEIEAATEKFSEAMKIGEGGYGPVYKGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEHMNNGSLEDRLFRRGNTLPIPWRRRFKIASEVATALLFLHQTKPEPLVHRDLKPANILLDRNFVTKISDVGLARLVPPSVADQVTQYHMTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGILLLQIITAKPPMGLAHHVKRAIERGRFGEMLDPAVQDWPIEETLTFANLALKCAELRKKDRPELGSVIVPELKRLKDFGKSHSGGQDGSSGPSTSQGN
Length715
PositionTail
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.06
Grand average of hydropathy-0.459
Instability index42.94
Isoelectric point9.05
Molecular weight79275.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33898
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     157.05|      41|      49|     347|     387|       1
---------------------------------------------------------------------------
  311-  343 (37.88/24.83)	..............DMYSSACKEAISAKNKAKELSQwKLEESRKFEE
  347-  387 (67.08/50.08)	AEE.....TALAAAEMEKAKCKAAIEAAEMAQRMAE.KEAQRRKHAE
  394-  434 (52.10/37.13)	AEEknrvlTALSKNEF.RYR.KYTIEEIEAA...TE.KFSEAMKIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.09|      12|      99|     134|     148|       2
---------------------------------------------------------------------------
  134-  148 (19.30/18.45)	VDVPTSlvkSAPDFC
  236-  247 (24.80/14.69)	IDIPST...SRPSFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.26|      27|      49|     481|     509|       4
---------------------------------------------------------------------------
  481-  509 (44.41/37.84)	MVLLLGACPEYgcLVYEHMNNGS.LEDRLF
  533-  560 (43.85/28.92)	LLFLHQTKPEP..LVHRDLKPANiLLDRNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.20|      20|     326|     260|     281|       6
---------------------------------------------------------------------------
  260-  281 (31.87/28.91)	AFGTFGSIDVTGQNLdfGASTT
  589-  608 (39.33/27.41)	AAGTFCYIDPEYQQT..GKLTT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33898 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNTAAPPKQPSPHGLPPYINPTDHGEVDHASRLQLTRGV
2) QNLDFGASTTSPRNSSTRHSAREIDAEMKR
169
272
207
301










Molecular Recognition Features






MoRF SequenceStartStop




1) IVPELKRLKDFGKSHSG
685
701