<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33898

Description U-box domain-containing protein 35
SequenceMAPQPYPDDSIPAVNSTAVAIEKDNKNSKAAVRWAVEHLVGGNPFIILIHVRHKNHRSYAESTSHGDTYDSDVHSIFAPFRGYCARKAIQMKEVLLDDFDVSKAIMDYVNKNCITNVVAGASTKNSITRKFKSVDVPTSLVKSAPDFCSVYVISKGKLISARNAQRLALNTAAPPKQPSPHGLPPYINPTDHGEVDHASRLQLTRGVIVRNGGGSEKMVPGRERARSVPSLSLDIIDIPSTSRPSFCRDSTAEESDFVAAFGTFGSIDVTGQNLDFGASTTSPRNSSTRHSAREIDAEMKRLKLELKQTMDMYSSACKEAISAKNKAKELSQWKLEESRKFEEARLAEETALAAAEMEKAKCKAAIEAAEMAQRMAEKEAQRRKHAEMRARREAEEKNRVLTALSKNEFRYRKYTIEEIEAATEKFSEAMKIGEGGYGPVYKGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEHMNNGSLEDRLFRRGNTLPIPWRRRFKIASEVATALLFLHQTKPEPLVHRDLKPANILLDRNFVTKISDVGLARLVPPSVADQVTQYHMTSAAGTFCYIDPEYQQTGKLTTKSDIYSFGILLLQIITAKPPMGLAHHVKRAIERGRFGEMLDPAVQDWPIEETLTFANLALKCAELRKKDRPELGSVIVPELKRLKDFGKSHSGGQDGSSGPSTSQGN
Length715
PositionTail
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.06
Grand average of hydropathy-0.459
Instability index42.94
Isoelectric point9.05
Molecular weight79275.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33898
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     157.05|      41|      49|     347|     387|       1
---------------------------------------------------------------------------
  311-  343 (37.88/24.83)	..............DMYSSACKEAISAKNKAKELSQwKLEESRKFEE
  347-  387 (67.08/50.08)	AEE.....TALAAAEMEKAKCKAAIEAAEMAQRMAE.KEAQRRKHAE
  394-  434 (52.10/37.13)	AEEknrvlTALSKNEF.RYR.KYTIEEIEAA...TE.KFSEAMKIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.09|      12|      99|     134|     148|       2
---------------------------------------------------------------------------
  134-  148 (19.30/18.45)	VDVPTSlvkSAPDFC
  236-  247 (24.80/14.69)	IDIPST...SRPSFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.26|      27|      49|     481|     509|       4
---------------------------------------------------------------------------
  481-  509 (44.41/37.84)	MVLLLGACPEYgcLVYEHMNNGS.LEDRLF
  533-  560 (43.85/28.92)	LLFLHQTKPEP..LVHRDLKPANiLLDRNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.20|      20|     326|     260|     281|       6
---------------------------------------------------------------------------
  260-  281 (31.87/28.91)	AFGTFGSIDVTGQNLdfGASTT
  589-  608 (39.33/27.41)	AAGTFCYIDPEYQQT..GKLTT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33898 with Med32 domain of Kingdom Viridiplantae
Unable to open file!