<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33894

Description Pre-mRNA-processing factor 40-A-like protein
SequenceMANNPQISGVQYRPAVPAQQFIPVTTQPFQPIGRGVPPMNALPPAPPQFQQPFYSQPTQQFPPRAQDMLPLQTIPLPVALPNNHPLPIAHPQPSVQTPSNFTPGIGGPGVSFSSSYTFAPSYGQIRRSFNDPTSVIAQQQTIENPAMTNSVAPVTSVQPDLSAEALSDWIEHMSSNGKKYYYNRRTRLSSWEKPVELMTPTEKADATTNWKEFTSPDGKKYYYNKVTKESKWVMPEELKLAREQVAKASHKETQQETSCSVPDSVSSPTVNADASPKALGITSSPVSVEPVAAVVEPQGIEVSRSSSSPHVASAIKVNTVEDPTPSNVVSTSDTDTGSIGTATNVATEKMNNSNNAAQDTINSSDGVSTHHKEEASNGLIGEKANDIAPEDIVVDREPLVYANKLDAKNAFMTLMESANIGSDWTWDRAMRVIINDKRYGALKTLGERKHAFNEFLGQRKKQEAEERRIRQKKAREEFKRMLEESAELTSSIRWSKAESLFEKDERFRAVERDRDRKDLFDNYIEELKKKERAKEQEERKRKIIEYRQFLESCDFIKASSQWRKVQDRLEADERCYCLEKIDRLEHFQEYLNDLEREEEEQRKIQKEELRKAERKNRDEFRKLMEDHVAAGTLTAKTHWRDYCVKVKELPEYQAVASNTSGSTSKDLFEDVVEELQKQYHDDKSRVKDAVKLGKITLSSTWTLDDFKNAITNDIGSPPVRDVNLKLVFDELLERVREKEEKEAKKRKRLVDDFSYLLSSIKEINASSEWEDCKSLFDKSHEYSSIGLESLCQQIFEKYVMQLKEQAKEREQKRKEEKARQEKEREEGDRSKVKQRKEKEGGRMKEKEEHLEKEDGMDNKTADLNESRASKDEKRSVKESNRRHRKRHHSSEDYADENETDQFKKSHGPSSEHKKSRRHEESDHESRHKRHRRGHRQGSRRHGDHEELEDGEFGDGKVDSQSFPS
Length964
PositionUnknown
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.07
Grand average of hydropathy-1.092
Instability index54.85
Isoelectric point6.36
Molecular weight110619.68
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33894
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     190.65|      38|      38|     159|     196|       1
---------------------------------------------------------------------------
   91-  134 (51.07/25.54)	PQPSVQTPSNFTPGIGGPGVSFsssYtfapsYGQIRR..SFNDPTS
  159-  196 (70.25/37.53)	PDLSAEALSDWIEHMSSNGKKY...Y.....YNRRTRLSSWEKPVE
  200-  237 (69.33/36.95)	PTEKADATTNWKEFTSPDGKKY...Y.....YNKVTKESKWVMPEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.83|      14|      21|     498|     517|       2
---------------------------------------------------------------------------
  501-  515 (19.53/12.08)	FEkDERFRAVER.DRD
  604-  618 (16.30/ 8.57)	IQ.KEELRKAERkNRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     424.76|      66|      66|     408|     473|       3
---------------------------------------------------------------------------
  408-  473 (103.09/54.44)	KNAFMTLM.ES.AN.IGSDWT....WDRAMRVIIND.K..RYGAL..KTLG.E...............RKHAFNEFLGQRKKQE.AE.ERRIRQKK
  475-  542 (55.55/26.27)	REEFKRMLeES.AE.LTSSIR....WSKA..................ESL...fekderfraverdrdRKDLFDNYIEELKKKErAK.EQEERKRK
  546-  603 (63.25/30.83)	...YRQFL.ES.CDfIKASSQ....WRKVQDRLEAD.E..RCYCL..EKID.R...............LEH.FQEYLNDLEREE.EE.QRK.....
  619-  685 (55.27/26.11)	..EFRKLM.ED.HV.AAGTLTakthW.RDYCVKVKElP..EYQAVasNTSGsT...............SKDLFEDVVEELQKQY.HD.DK....SR
  687-  748 (77.92/39.52)	KDAVK..L.GK.IT.LSSTWT....LDDFKNAITND.I..GSPPV..RDV..N...............LKLVFDELLERVREKE.EK.EAK.KRKR
  752-  817 (69.69/34.65)	D..FSYLL.SSiKE.INASSE....WEDCKSLF..D.KshEYSSI..GLES.L...............CQQIFEKYVMQLKEQA.KErEQKRKEEK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.35|      37|      37|     854|     890|       4
---------------------------------------------------------------------------
  825-  851 (33.54/14.53)	...........EEGDR.SKVKQRKEKEGGRMKEKEEHLE
  854-  890 (63.79/34.26)	DGMD.NKTADLNESRA.SKDEKRSVKESNRRHRKRHHSS
  892-  923 (39.02/18.11)	DYADeNETDQFKKSHGpSSEHKKS.....RRHEESDH..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.14|      27|      37|      17|      43|       5
---------------------------------------------------------------------------
   17-   43 (51.81/29.09)	P..AQQFIPVTTQPFQPIGRGVPPMNALP
   47-   75 (47.33/26.00)	PqfQQPFYSQPTQQFPPRAQDMLPLQTIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.72|      15|      18|     276|     292|       6
---------------------------------------------------------------------------
  276-  292 (22.82/20.01)	PKalGITSSPVSVEP.VA
  297-  312 (22.90/13.06)	PQ..GIEVSRSSSSPhVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.97|      16|      25|     333|     355|       7
---------------------------------------------------------------------------
  333-  348 (27.50/28.17)	DTDTGSIGTATNVATE
  359-  374 (25.47/ 8.75)	DTINSSDGVSTHHKEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33894 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ELKLAREQVAKASHKETQQETSCSVPDSVSSPTVNADASPKALGITSSPVSVEPVAAVVEPQGIEVSRSSSSPHVASAIKVNTVEDPTPSNVVSTSDTDTGSIGTATNVATEKMNNSNNAAQDTINSSDGVSTHHKEEASNGLIGEKANDIA
2) FNDPTSVIAQQQTIENPAMTNSVAPVTSVQ
3) IGRGVPPMNALPPAPPQFQQPFYSQPTQQFPPRAQDMLPLQTIPL
4) QAKEREQKRKEEKARQEKEREEGDRSKVKQRKEKEGGRMKEKEEHLEKEDGMDNKTADLNESRASKDEKRSVKESNRRHRKRHHSSEDYADENETDQFKKSHGPSSEHKKSRRHEESDHESRHKRHRRGHRQGSRRHGDHEELEDGEFGDGKVDSQSFPS
237
129
32
805
388
158
76
964










Molecular Recognition Features






MoRF SequenceStartStop




1) EELEDGEFGDGKVDSQSF
2) ESDHESRHKRHRR
3) KSRRH
945
920
914
962
932
918