<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33891

Description Uncharacterized protein
SequenceMAKKSGSLDYWRSYFRTANSSIFEIIDHAIMVAASDRPKEFRLRRDRIAEKLFSCRLRKCCGCERVELSVPWDDDDNGGDDDDCDGNDDGDGDSGDRDRSGEFEAGASKESKANSSRDDDRAEEEMNHVSNFSYLDAEALTDEIEEESQIRGEVLRIKEILQNREEESESVLFGELRRLQFMALTVDTLKETEIGKAVNRFRKHGSKEIRHLARTLIDGWKDMVDEWVNTTAAIATMNSTEGTPDSINPSVLDEEEGLPSPPLDEGAFFATEPTSMELSRFFDGMDDDGNPRNSGAFTKNRDNGRKPSIENQNVPKQKQKLSTEANVLTKEHKVQQQKKQEGVMKTTRPTNTDFGPGRPPRISTEQKLNSAMKSQQKPDRPALQRRPLSVPQDKLKSSDEVAVQVKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQGLGHRNPHMKPGNHNRHWGHGRR
Length464
PositionUnknown
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.05
Grand average of hydropathy-1.090
Instability index47.80
Isoelectric point5.73
Molecular weight52751.87
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP33891
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.53|      50|      60|     236|     293|       1
---------------------------------------------------------------------------
  236-  292 (80.98/58.66)	TMNSTEGTPDSI..............NPSVLDEEEGLPSPPLDEGAFFATEPTSMElsrFFDGMDddgnPR
  298-  361 (80.55/39.89)	TKNRDNGRKPSIenqnvpkqkqklstEANVLTKEHKVQQQKKQEGVMKTTRPTNTD...FGPGRP....PR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.29|      19|      19|     138|     156|       2
---------------------------------------------------------------------------
  138-  156 (31.49/20.63)	EALTDEIEE.ESQIRGEVLR
  159-  178 (27.80/17.38)	EILQNREEEsESVLFGELRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.29|      10|      17|      73|      82|       4
---------------------------------------------------------------------------
   73-   82 (20.31/11.17)	DDDDNGGDDD
   89-   98 (19.98/10.87)	DGDGDSGDRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.84|      16|      17|     379|     395|       5
---------------------------------------------------------------------------
  379-  395 (23.14/20.85)	DRPALQRRpLSVPQDKL
  399-  414 (24.69/15.80)	DEVAVQVK.LEATKRKL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33891 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DDDNGGDDDDCDGNDDGDGDSGDRDRSGEFEAGASKESKANSSRDDDRAEEEMNH
2) TAAIATMNSTEGTPDSINPSVLDEEEGLPSPPLDEGAFFATE
3) TSMELSRFFDGMDDDGNPRNSGAFTKNRDNGRKPSIENQNVPKQKQKLSTEANVLTKEHKVQQQKKQEGVMKTTRPTNTDFGPGRPPRISTEQKLNSAMKSQQKPDRPALQRRPLSVPQDKLKSSDEVAVQVKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQGLGHRNPHMKPGNHNRHWGHGRR
74
231
274
128
272
464










Molecular Recognition Features






MoRF SequenceStartStop




1) FATEP
2) HNRHWGHG
3) MELSRFF
4) YWRSYFR
269
455
276
10
273
462
282
16