<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33885

Description Uncharacterized protein
SequenceMDPEIKKFGRGPRELTGAVDLISHYKLLAHHDFFCKRSLPLAIADTHYLHNVVGDTEIRKGEGMQLDQLIQNTSYSRDTNARIQPFDLDILQEAFQLRETGPIDLPPAEKGILTIAGKSKSEFKDKERKHKKHKDRDKEKDKEHKKHKHHHKDRSKDKDKDKKKDKSGHHDSGADHTKKHHEKKRKHEGDEDINDVHRHKKSKHKSSKIDEMGAIKVAG
Length219
PositionHead
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.04
Grand average of hydropathy-1.400
Instability index31.82
Isoelectric point9.45
Molecular weight25344.31
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33885
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.49|      17|      21|     133|     153|       1
---------------------------------------------------------------------------
  133-  153 (27.84/14.14)	HKDRDKEKdkehKKHKHHHKD
  155-  171 (29.65/ 8.10)	SKDKDKDK....KKDKSGHHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.90|      12|      20|     180|     191|       2
---------------------------------------------------------------------------
  180-  191 (23.83/10.94)	HHEKKRKHEG...DE
  197-  211 (18.08/ 6.54)	HRHKKSKHKSskiDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.33|      15|      20|      71|      90|       3
---------------------------------------------------------------------------
   70-   88 (22.51/27.42)	I.QNTSYSRDTNariqPFDL
   90-  105 (21.83/ 9.69)	IlQEAFQLRETG....PIDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33885 with Med19 domain of Kingdom Viridiplantae
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