<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33880

Description Dynamin-related protein 1C
SequenceMATMQSLIGLVNRIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSAAVRKEIQDETDRITGKTKQISNHPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVEDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPTCERTFGVLTKLDLMDKGTNAVDVLEGRSYRLQHPWVGIVNRSQADINKNVDMMAARRKEREYFQTSPEYGHLAHKMGAEYLAKLLSKHLENVIRQRIPSIISLINKTIDELNAELDRIGRPIAVDSGAQLYTILELCRAFDRVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFDRHLSTKNVQRVVSEADGYQPHLIAPEQGYRRLIDGSIGFFKGPAEASVDAVHHVLKELVRKSIAETEELKRFPTLQSDIAAAATEALERFREDSRKTVLRLVDMESSYLTVEFFRKLHLEPEKNPNPTGPNADRYADNHFRRIGSNVSAYINMVCDTLKNSIPKAVVYCQVREAKRSLLSHFYAQVGRREKERLSAMLDEDPALMERRATIAKRLELYKSARDEIDSVAWKKSVFMLEKKKKILEIKEQLEDSNQSEDTLVKLLQSLTDMDITFQALKETDIGRHVNRLRKHSSSEVKRLVKQVGGAEREQGLLQILIEMDGFKVSTSQVLVIGATNRLDILDLALLWKGRFDKIIRVGPYNLKFVFLYNKEPFEHDMCMLEITEAEKEALLQEVAELTEDFTGAELQNVLNEGGILAARKDLDYIGRDELLEALFWTDVKMIRSQPNMCYAETPGKVFSRKSDYVNSIVRACARWSICLKAWNPKWCTGMLIEFPSDLPLPSAPANDGCVSGFVETTRQQLRTLKPNHRMNWTGFAVAHHLNSNALKAVEILEAYEGMLEDDFPPDNERCEHGEMLLYKISLLEESGSLERALDELHKKELKIVDKLAYKEQEVSLLVKLGRFEEGATLYKALLAMNPDNYRCFGRFGLLLFLFVCWSYFWCSEF
Length1009
PositionUnknown
OrganismMorus notabilis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Rosales> Moraceae> Morus.
Aromaticity0.07
Grand average of hydropathy-0.302
Instability index38.89
Isoelectric point6.19
Molecular weight114174.71
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:InterPro

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
ATPase activity	GO:0016887	IEA:InterPro
GTP binding	GO:0005525	IEA:InterPro
GTPase activity	GO:0003924	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33880
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.33|      22|      30|     182|     204|       1
---------------------------------------------------------------------------
  182-  204 (37.11/26.54)	DKGTNaVDVLEG....RSYRLQHPWVG
  212-  237 (35.21/20.53)	DINKN.VDMMAArrkeREYFQTSPEYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     170.94|      52|     143|     573|     627|       2
---------------------------------------------------------------------------
  573-  627 (82.05/70.77)	WKKSVFMLE....KKKKIL.EIK...EQLEDSNQSEDTlvkLLQSLTDMDITFQALKETD.IGR
  633-  664 (23.39/11.79)	.............RKHSSS.EVKrlvKQV.GGAEREQG...LLQILIEMD..............
  717-  771 (65.50/48.07)	FEHDMCMLEiteaEKEALLqEVA...ELTEDFTGAE......LQNVLNEGGILAARKDLDyIGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.67|      21|      87|     683|     708|       3
---------------------------------------------------------------------------
  683-  708 (24.92/33.58)	DILDlALLWKgrfD.KIIRVGPyNLKF
  773-  794 (37.76/23.86)	ELLE.ALFWT...DvKMIRSQP.NMCY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.59|      54|     378|     454|     572|       4
---------------------------------------------------------------------------
  454-  476 ( 6.09/169.38)	VEFfrklhlePEKNPNPTGPNAD..................................................................................................................
  535-  572 (51.83/33.55)	.......................ryadnhfrrigsnvsayinmvcdtlknsipkavvycqvreakrsllshfyaqvgrrekERLSAMLDED.P................ALMERRATIAKRL.ELYKSARDEIDSVA
  836-  952 (51.67/ 0.00)	IEF.......PSDLPLPSAPAND.............gcvsgfvettrqqlrtlkpnhrmnwtgfavahhlnsnalkaveilEAYEGMLEDDfPpdnercehgemllykiSLLEESGSLERALdELHKKELKIVDKLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.28|      10|      23|     274|     283|       7
---------------------------------------------------------------------------
  274-  283 (16.88/12.28)	TIDELNAELD
  299-  308 (18.40/14.20)	TILELCRAFD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.96|      14|      16|     107|     121|      10
---------------------------------------------------------------------------
  107-  121 (19.37/19.95)	DLPGLTKVAVEgQPD
  126-  139 (24.59/18.44)	DIENMVRSYVE.KPN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.02|      14|      72|     909|     922|      11
---------------------------------------------------------------------------
  909-  922 (29.28/17.01)	PDNERC.EHGEMLLY
  982-  996 (24.73/13.31)	PDNYRCfGRFGLLLF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33880 with Med26 domain of Kingdom Viridiplantae
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