Description | Mediator of RNA polymerase II transcription subunit 4 |
Sequence | MDKYIDGRFERLEKALANLIDSVTKYHPSIQQGEELNLADQELSRGLEEVQTHQNNYLRIQQLRESSNALDTQIRDTLSNLATTRKDIVTTQTTTFPSGPSYPIAYEELLNYARRISKTTMPPAGTIKAAPPTPDVPEVQTPGGQTPAAQTPGPESQAASIMTPSAPASSQVQSPAVINGTPAVSQEPATQQSSMSANTVLPSEWTQFLNPLTDQIFLPWPNDLQLGAGSLAANQLLQEQGIDPKGYDPAEEEERKRREEEERKQKEEEDRIAQEEREKKQREERERQRIERERQREKDQEAWRRASLVGGPAAPGEQRSPTGPPQQKAQFQFTNLDDLDDDDDDD |
Length | 346 |
Position | Middle |
Organism | Gibberella moniliformis (strain M3125 / FGSC 7600) (Maize ear and stalk rot fungus) (Fusarium verticillioides) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium> Fusarium fujikuroi species complex. |
Aromaticity | 0.05 |
Grand average of hydropathy | -1.064 |
Instability index | 64.72 |
Isoelectric point | 4.66 |
Molecular weight | 38770.02 |
Publications | PubMed=20237561 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364141 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP33849 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.86| 14| 15| 258| 271| 1 --------------------------------------------------------------------------- 258- 271 (24.08/10.43) REEEERKQKEEEDR 274- 287 (24.77/10.89) QEEREKKQREERER --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 83.00| 16| 16| 123| 138| 2 --------------------------------------------------------------------------- 97- 107 (22.24/ 7.55) PSG.....PSYPIAYE 123- 138 (31.78/13.35) PAGTIKAAPPTPDVPE 142- 155 (28.98/11.65) PGGQTPAA.QTPG.PE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 83.31| 27| 28| 30| 56| 3 --------------------------------------------------------------------------- 30- 56 (44.57/25.86) IQQ.GEELNLADQELSRGLEEVQTHQNN 60- 87 (38.75/21.66) IQQlRESSNALDTQIRDTLSNLATTRKD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 47.96| 15| 35| 194| 211| 4 --------------------------------------------------------------------------- 194- 211 (22.04/18.98) SMSANTVLPSewtQFLNP 230- 244 (25.92/12.92) SLAANQLLQE...QGIDP --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) KDQEAWRRASLVGGPAA 2) PQQKAQFQFTNLDDLDDDDDDD 3) YPIAYEELLNYARRI | 298 325 102 | 314 346 116 |
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