<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33828
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDGTSYNMDVDDLFGDSEHVNIQTINTTPPVKGRDARIDELGSTGCCQKISWSKNGCVAYITPDGYSVNLKIFSRNSETGKWALGKPVPLELPQGSEVFPLIHLSWSHLGNDLAVMDQAGRVMIFSCAMALDRMHFTRAEIAHPESEVDAVVGMHWLAILPYAQKNLIAWSAAREGNKWKWNIRQHLFNNAHHPVDGKASLIYLKRYGELKLRFQQNDNNWQEASTQLGPMISTKESFTHAAFASNNDNTLLLAAYDVKRRLHLYRVETIWNVPADKRSQNAGPFEKPTIQVSLLALEDTCNPVDMATDELSNGGTSESAATAAAQLTHLDFLPVTPQQDDGSVPTIQAIFSKPPNPISYDMNPQETRYSIIVKWQVHQEQQNQLHPSLEQVTSKKKSVSSLPAQTTFLLKRQPDFALHSVVLDFYPMWYNMLLAFCYSDGSIEFRKRSTMEVIMPDDNTDNVTSLLQAGFIFQHAEPSLHVAFSPNHCVAVGMQLDGTTKLRLMEYTHGTLSTDDDDPHHSAALAALILQSSSAANQYFSSDDIFAIIDSMSDKRKQDFITLLFEGLQVNIDCGIDDSSTNHFILLGRSPFFVKTLSAMHLLGLQGTINRTLVSKTAWQILNIKYVTQILTTIVRMHGDVSKINLRPEAVPQMIGTIRWTMHFMAYILDDLFALGRALSDIPPADLTRDVLESKIKETNKPAILLLLSAFPRAMMKLWAQPIQWVKRSAESQAATSNPAGGPVPVQSPESKRLYTPLLTAVSELPFEWRWFEILVTETTAHIRAIYKQRNLNDAQRNSIEREILLGKIPDILFPVAKRLVTDTLWNSNQQNACLADKLDMGKLMFFDTTWLGFTDSKRARVWHEEHVVDVCQKMIIRGTGTWVHPVNTSGHHLMGRGRSDSLQSAAGGGGASAGATANGESNAERKARNMLRQCVRCGACMEDVVPGLQGYTIHHYQWLVGVSKHCVCGNSWMLVETKPSLK |
Length | 983 |
Position | Tail |
Organism | Bipolaris oryzae ATCC 44560 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Pleosporineae> Pleosporaceae> Bipolaris.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.242 |
Instability index | 44.90 |
Isoelectric point | 6.45 |
Molecular weight | 109871.07 |
Publications | PubMed=23357949
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP33828
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 85.73| 25| 138| 411| 442| 1
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411- 442 (40.88/42.04) KRQPDFalhsVVLDFYPMWYNMLlafCYSDGS
555- 579 (44.85/27.27) KRKQDF....ITLLFEGLQVNID...CGIDDS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 147.94| 48| 138| 70| 125| 2
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75- 125 (74.24/72.88) RNSETGKWALGKpVP.LELPQGSEVfpLIHLSWSHLGNDLAVMDQ..AGRVMIF
797- 847 (73.70/46.56) RNSIEREILLGK.IPdILFPVAKRL..VTDTLWNSNQQNACLADKldMGKLMFF
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