<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33820

Description Uncharacterized protein
SequenceMNQNFQGAPDREDIRLLDQLRSQLMPMIKTMDRLQAEMQFKMSRGEAVDWPQIHRATTMITNYITSIHLLINGGFRHQNKLVTQKQRIPSKDAAGNHILDAGGNEVFVERDVRRRLIATQPLPTNTEKFQALHPFPNPLYPMNAGGGMAAGMAGTLLRKRLEPMEEGWVEDKIRKAAEWLYVPEEWGVDMNKKVSSKQEKSEKEGEDDDDDDDDARVPESERLDSEAIPTTRVKDVLSGDAIKDIWQHAHQEVFDMKYLRQTYPASYPAEDAQDANEGDEEEDDEDEGDEEEEEEEEEFEDVMDTSGGQNAGDEEAKPKVMKKKKVVVGKLPVHQAVSGAPVFSLGVVQRFTETGEV
Length357
PositionHead
OrganismBipolaris oryzae ATCC 44560
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Pleosporomycetidae> Pleosporales> Pleosporineae> Pleosporaceae> Bipolaris.
Aromaticity0.06
Grand average of hydropathy-0.868
Instability index50.88
Isoelectric point4.64
Molecular weight40411.47
Publications
PubMed=23357949

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33820
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.70|      18|      72|     204|     221|       1
---------------------------------------------------------------------------
  204-  221 (32.31/16.75)	EGEDDDDDDDDARVPESE
  277-  294 (31.40/16.07)	EGDEEEDDEDEGDEEEEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.87|      16|     112|      12|      38|       2
---------------------------------------------------------------------------
   12-   27 (28.18/ 6.87)	EDIRLLDQLRSQLMPM
  127-  142 (30.95/ 8.57)	EKFQALHPFPNPLYPM
  157-  164 ( 7.73/ 8.57)	........LRKRLEPM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33820 with Med8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KYLRQTYPASYPAEDAQDANEGDEEEDDEDEGDEEEEEEEEEFEDVMDTSGGQNAGDEEAKPK
2) MNKKVSSKQEKSEKEGEDDDDDDDDARVPESERLDSEAIPTTRVKDVL
257
190
319
237










Molecular Recognition Features






MoRF SequenceStartStop




1) AKPKVMKKKKVVVGKLPVHQA
316
336