<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33773
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MVVLSSDVLMRRFYEKKYSSRISWSKNGFIAYPAQGDDRSQKLFLTYLECIDGRTWQLAPAKQFDVFSSSEEQPSQTPTAGGVVAVTSNSTKNTEITLVSWGPIATDLAVSDSAGNMVILVSGVRKNDLTQFGVQHPFTMSSLNELEIVYTDFPSKKLQPDVTASTQNEVIGFKWLNSDKPIIANTPAVRVETTHDTPVSSGAAAPLGAAHNDSAGHAYSYGVHQYKPHGAMHPLPSKQACVGVRKNGEFCLWHQGEHGLDYHRVSTFLDPHETDYFSLCEIGLQRDGSIVVVGFSPLSQCIRIYSVSIQWGYFVNAAIQQQKNQAYNTPDDQKVPPKLAVKRLFKRNISTVFPHKLVPGSKSSTENLGIDLQQLVHIYLVPPSFNSNTELEVFLGFENISSSKSHSTLLRFQLTEKEASNLHSAFITMGERRGVVPPAPMSANGLETKKSGSFSASSPTGSEAKTFDLVYKQSLRFNESILGFTSLNLDMLIAITFANGEVKMFNRSPLKQINNMYADPKLQSSNTALLPSSISSLFDAGFEFPKLDFRPRAMCISPNLCCFVALSRSSNKLYLECLEGKAFNADTKPRPGLLLSIAASCALRHSSACFTSTSTEDLVATIQQELVRAAKSVSKEYSQALLVSILQESHRAINFSLDFSKEQVDRLLGSPPLQRLLNLQLALGTTFDWQRTKSGKVAWALLNLRLCAFGMMITLRSVYHHMNKLSKRGSSVDLYNDAKWRSENVLSSLGVIRWCMDYILYLNQQIVELCQVFKDVDQTPTSPDPLEALKSYVALPLILGKVPRSLLLYSMATMKRLNDFVQKCIEKIESSNGAPSVGVSANSIKSVEDALFFAPTTSTQANKNNKSFAIDPLNTPTALPTVEAFYRLREILNNSPVPLDGFEKFLTEADTALRNLRIDKSTSLAIEQQLVCQGHVPKPFVEPIKKLLSVYSQSLLNEVDHVELYFYNFDWLMLDSPDQTTISTEDPVVLSITNETLANEGYATLFKPISPSGDMVDSLRKTICYPPGDPNITSAPVVERKCVRCGAVSSLMETTHLSNVGISLWSLAFQRNCLCGSFWVNI |
Length | 1082 |
Position | Tail |
Organism | Kuraishia capsulata CBS 1993 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycetales incertae sedis> Kuraishia.
|
Aromaticity | 0.09 |
Grand average of hydropathy | -0.139 |
Instability index | 47.47 |
Isoelectric point | 7.51 |
Molecular weight | 119737.30 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP33773
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 208.17| 49| 117| 72| 127| 1
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72- 122 (74.88/53.50) EQPSQT..PTAGGVVAVTSNSTKNTEITLVSWGPIAtdLAVSDSAGNMVILVS
192- 237 (78.39/49.52) ETTHDT..PVSSGAAAPLGAAHNDSAGHAYSYG.....VHQYKPHGAMHPLPS
975- 1016 (54.91/30.76) DSPDQTtiSTEDPVVLSITNETLANEGYATLFKPIS.......PSGDMV....
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 70.81| 20| 137| 372| 391| 2
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372- 391 (35.87/25.85) LQQLVHIYLVPPSFNSNTEL
510- 529 (34.93/24.96) LKQINNMYADPKLQSSNTAL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.45| 20| 24| 624| 647| 4
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628- 647 (32.67/30.94) RAAK...SVSKEYSQALLVS.ILQ
651- 674 (25.78/11.93) RAINfslDFSKEQVDRLLGSpPLQ
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