<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33769

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMDANSPLDELQWKSPEWINAFGLRTDNVLEYFSQSPFFDRTANNQVLKMQSQFNEQLQNMSPENIAQELKKMKGVEFVVASVREPDFWIIRKQNRTSPTETQPLADYYIIGSSVYMSPAVSSIISSRLLSTVLSLRNSLNILQTLPKFSPSEGHNYNVNIAEGASAVGHPSLLPSKTVTISSTPMVSSGSVAGSNAGFTGNATVSQMVGSTSSTATSATTFNNLLNLSMADNTVYLEDLPLAGVDPTQGTSNLAPPGTTRAKVDSSRVQYSKKPVAR
Length277
PositionHead
OrganismKuraishia capsulata CBS 1993
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetales incertae sedis> Kuraishia.
Aromaticity0.07
Grand average of hydropathy-0.283
Instability index58.33
Isoelectric point6.15
Molecular weight30007.32
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33769
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.28|      28|      46|       8|      36|       1
---------------------------------------------------------------------------
    8-   36 (48.75/41.11)	DELQWKSPEWInAFGLRTDNVLEYFSQS...P
   55-   85 (43.54/31.03)	EQLQNMSPENI.AQELKKMKGVEFVVASvreP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     194.31|      55|      93|     128|     184|       3
---------------------------------------------------------------------------
   89-  126 (33.85/15.17)	.............IIRKQN..RTSPTETQPLADYYIIGSSVYMSPavsSIISS.........
  128-  184 (85.73/55.42)	LLStvLSLRNSLNILQTLP..KFSPSEGHNYNVNIAEGASAVGHP...SLLPSKTVTISSTP
  224-  274 (74.74/42.82)	LLN..LSMADNTVYLEDLPlaGVDPTQGTS...NLAPPGTTRAK......VDSSRVQYSKKP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33769 with Med6 domain of Kingdom Fungi
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