<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33766

Description Uncharacterized protein
SequenceMEQGFMYQWQSELSFDDRRKFVAMICRTLSEVQGAGFSAPVAKQEAIAFEKHAYDASSSKREYIDFLKQKLMSIRHNTDNSGAMHNMNGVQMNMPQFVGNSNTNNANMMSQNDVQGIDQREFLLKQAQMRNNQGGMIQNPQMGQMSQQQQPHQQNIPQQQQQNIPQQHIPQQQQQRNPQLAAVPGTVNVKNLPIPEALLKRIQGLPPGVNTWPQIMALIQRRQFSPQTIQVIKQVHALHTQLVASKSQQESTMMSIANNADTSSAPTANLNAQVSGVPNPQQVLNQANAQQMMQRQQMMQANNQKRMVQQHPQQSQPVGQRMMNNQHVPVQQQMKQAPQHVPMQQPQQDMNGLNISPTMRQVPPQQSQQQAGPNQDAPMNEQLIAELKQQAMQVLQTLKANNKVPPNLTPQQQQQFIKKFIYFQYNQRKQQHQQMGAEGITANQQQMNSQPRSRGFSGNANIMAPGMGDGFQSMAGMNVKQPLGMGGLPQQPQQPQQPQQRWNNTNPNAGIQQQQQQQQQQQQKPQQFNGQFLNMGGQMQQSPVLPQQQLPTTQNSRANSRGNVLGQQHMLQQQQQQAHQQVPISSGMNHSGPAHQNLLPGIVATEDDWRQLRAIYDEVHGLPINLKNVTNELNQDQKQQVFQHARNAAQLASLTDNLIPNFYFATKNAEGTKRLIHMKFMIKQIIEGLKRSEYVATPDLIQKIMSQIQRYLGYVREQQKIFAQHMNLNKAPMAQQQSAKPVSQIQVQQNFMQQQNMAANRNVGVSQQQQRVQQHQQPPHQQMGMGMGMGMPQGPNDRGQPSVFDAAGSGLMAVDPTFQQIPSQGLVDASMIAMDIPTQKSDVSDSAMVHPAQKKNVPGARRKSKAPAPRKKGDTPTSAISATPGTAKTATPGSLAEQQSGISAPQSTAMAPEFQIAIKENAEALAKEEAERSALDAGRMRRRELANFDPSLYFLATLAYSFELREEENKIIESASENKDARAASSSAAILKDAKQPASSPLQRGLTPSAVLQTPLPFSVKTPSSAARNGAGLSPGTLVANGTKLGSGVSWTGKVKPRLIRAVMAEVPAVKSLAIGLFMPTPPDELRVKREADDDLHEGPKKPKQETGMGSWIVGAGF
Length1118
PositionTail
OrganismKuraishia capsulata CBS 1993
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Saccharomycetales incertae sedis> Kuraishia.
Aromaticity0.04
Grand average of hydropathy-0.771
Instability index61.30
Isoelectric point9.88
Molecular weight123979.94
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33766
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.57|      22|      24|     302|     324|       2
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  131-  152 (35.23/ 6.93)	NNQGGMI.QNPQMGQMSQQQQPH
  302-  324 (36.34/10.21)	NNQKRMVqQHPQQSQPVGQRMMN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     101.80|      17|      17|     454|     470|       3
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  454-  470 (30.12/15.22)	RGFSGNANIMAP.GMGDG
  472-  487 (25.71/11.59)	QSMAG.MNVKQPlGMG.G
  755-  768 (21.93/ 8.48)	QNMAANRNV....GVSQQ
  795-  810 (24.04/10.21)	PNDRGQPSVF.D.AAGSG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     653.49|     222|     352|     156|     444|       4
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  156-  444 (335.54/133.34)	IPQQQQ...............QNIPQQHIPQQQQQRNP.....QLAAVPGtvNVKNLPIpealLKRiQGLPPGVNTWPQimaliqrrqfspQTIQVIKQVHALHTQlvaskSQQESTMMSIANNADTSSAPTANL.................NAQVSGVP.NPQQVLNQANaQQmmQRQQmmqannqkrmvqqhpqqsqpvgqrmmnnqhvpVQQQMKQAPQHVPMQQ...PQQDMNGLNISPTMRQVPP...........QQSQQQAGPnqDapmneqLIAELKQQAMQVLQTLKANNKV.....PPNLTPQQQQQFIKKF..IYFQYN...................QRKQQ.....HQQMGAE.GITANQ
  488-  793 (317.95/88.29)	LPQQPQqpqqpqqrwnntnpnAGIQQQQQQQQQQQQKPqqfngQFLNMGG..QMQQSPV....LPQ.QQLPTTQNSRAN............SRGNVLGQQHMLQQQ.....QQQAHQQVPISSGMNHSGPAHQNLlpgivateddwrqlraiYDEVHGLPiNLKNVTNELN.QD..QKQQ................................VFQHARNAAQLASLTDnliPNFYFATKNAEGTKRLIHMkfmikqiieglKRSEYVATP..D......LIQKIMSQIQRYLGYVREQQKIfaqhmNLNKAPMAQQQSAKPVsqIQVQQNfmqqqnmaanrnvgvsqqqQRVQQhqqppHQQMGMGmGMGMPQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.35|      14|      15|     864|     878|       5
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  864-  878 (19.50/11.25)	SKAPAPRKKGdTPTS
  881-  894 (21.86/ 8.45)	SATPGTAKTA.TPGS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.41|      13|     144|     844|     860|       6
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  827-  839 (21.82/10.11)	VDASMIAM....DIPTQ
  844-  860 (18.60/16.80)	SDSAMVHPaqkkNVPGA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.50|      20|      24|     989|    1008|       7
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  989- 1008 (35.22/22.81)	AILK.....DAKQPASSPLQ.RGLTP
 1010- 1035 (23.28/12.10)	AVLQtplpfSVKTPSSAARNgAGLSP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33766 with Med15 domain of Kingdom Fungi
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