<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33739

Description Uncharacterized protein
SequenceYSVSPSASHQMADSSAFPASRIRNMVAVQEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEPVHQNEAALRGLAGATGSANGGAHNCRPEAGAAGPPKSVHDLKYRNDMPRLCGQRLDRLGSRKPKVSKASHDSLVPNSSPLPTNGISGSPESFPSPLDSSGHVGPEGNRLEHGENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQTKAVVLQQLDRVDETPGPPHPKGPPRCSLGSRNSRHEGSFARQRSPYTYKGSLPSPSPRPQSLDATQVPSPLPLAQPSTPPVRRLELLPSAESPVRWLEQPEGQAGCRAGLPPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPVHTEQPRTELDKPEAKASLQSPFEQTNWKELSRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRRGARKPHVLVPHGPPTDFPGLSREVTRDDLDRIQAHQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length577
PositionUnknown
OrganismOvis aries (Sheep)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Artiodactyla> Ruminantia> Pecora> Bovidae> Caprinae> Ovis.
Aromaticity0.04
Grand average of hydropathy-0.855
Instability index58.01
Isoelectric point9.39
Molecular weight63010.95
Publications
PubMed=20809919

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33739
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.55|      22|      22|     297|     318|       1
---------------------------------------------------------------------------
  177-  197 (28.20/10.14)	....SPLD.SSGHVGPEGNRLEHGEN
  293-  317 (33.02/13.26)	TqvpSPLP.LAQPSTPPVRRLELLPS
  318-  340 (24.33/ 7.62)	A..eSPVRwLEQPEGQAGCRAG.LPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.45|      20|      22|     430|     449|       2
---------------------------------------------------------------------------
  406-  430 (26.21/10.25)	DPMTRQIKPltqkePVRADSPVHTE
  431-  450 (34.24/15.31)	QPRTELDKP.....EAKASLQSPFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.93|      10|      26|     216|     225|       3
---------------------------------------------------------------------------
  216-  225 (24.09/ 8.71)	PGLGKPPGP..C
  243-  254 (20.84/ 6.60)	PGPPHPKGPprC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.57|      15|      22|     466|     482|       4
---------------------------------------------------------------------------
  466-  482 (21.68/20.66)	YLSRQSSllSSSGAQTP
  491-  505 (26.89/18.05)	YLKQEES..TRRGARKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.41|      11|      20|     371|     381|       8
---------------------------------------------------------------------------
  371-  381 (20.40/11.65)	KKKRYRPRDYT
  394-  404 (18.01/ 9.47)	KPVRLKERKLT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33739 with Med26 domain of Kingdom Metazoa
Unable to open file!