<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33733

Description Prostate tumor overexpressed 1
SequenceLAPPRPLGGGGGGGGGGGGGGGGGATARGPASRSRAPRCCPRGLQQGARGVCARVRLRACPDTPVQQGARVFGALGPIGPSSPGLALGGLAVGEHRLSNKLLAWSGVLEWQEKRRPYSDSTAKLKRALPCQAYVNQGENLETDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDCDSLKGLCRVMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQAVGPGGVAGRGWQAGAGLARAPPPDPRAPPCRRTEQWPRKLYMQLIPQQLLTTLVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFAGCVHFSYKASCEVRVLMLLYSSEKKIFIGLIPHDQSNFVNGIRRVIANQQQVLQRNLEQEQQQRGMGG
Length402
PositionUnknown
OrganismOvis aries (Sheep)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Artiodactyla> Ruminantia> Pecora> Bovidae> Caprinae> Ovis.
Aromaticity0.07
Grand average of hydropathy-0.268
Instability index46.25
Isoelectric point10.21
Molecular weight43693.19
Publications
PubMed=20809919

Function

Annotated function 
GO - Cellular Component
nucleoplasm	GO:0005654	IEA:Ensembl

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33733
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     460.21|     116|     136|     122|     249|       1
---------------------------------------------------------------------------
  122-  247 (228.96/182.26)	AKL.......KRALPCQAyvnqgenleTDQWPQKLIMQLIPQQLLTTLGPLFRNSQLAQFHFTnRDCDSLKGLCRVMGNGFAGCMLFPHISPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ
  263-  385 (231.25/156.05)	AGLarapppdPRAPPCRR.........TEQWPRKLYMQLIPQQLLTTLVPLFRNSRLVQFHFT.KDLETLKSLCRIMDNGFAGCVHFSYKASCEVRVLMLLYSSEKKIFIGLIPHDQSNFVNGIRRVIANQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.73|      13|     236|       8|      20|       2
---------------------------------------------------------------------------
    8-   20 (27.86/10.90)	GGGGGGGGGGGGG
  250-  262 (27.87/10.91)	GPGGVAGRGWQAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.15|      12|      15|      85|      96|       3
---------------------------------------------------------------------------
   85-   96 (21.26/12.16)	LALGG.LAVGEHR
  102-  114 (19.89/10.93)	LAWSGvLEWQEKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.36|      16|      18|      33|      49|       4
---------------------------------------------------------------------------
   33-   49 (29.18/17.80)	RSRApRCCP.RGLQQGAR
   54-   70 (27.18/11.60)	RVRL.RACPdTPVQQGAR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33733 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LAPPRPLGGGGGGGGGGGGGGGGGATARGPASRSRAPRCC
1
40










Molecular Recognition Features






MoRF SequenceStartStop




1) LAPPRPLGG
1
9