<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33670

Description Uncharacterized protein
SequenceMADVMSVGVNLEAFSQAISAIQALRSSVTRVFDSLKDGMKNKETLEGREKVFITEFQDNLQSVNRDLNELERLSNLVGRPSESHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYHAGLASSLLNQQSLKRSANQMGASAKRRPKVQPTTLVLPPQYVDDVISRIGRMFPDMTIELSRPNGTSAVLLVTLGKVLKAIVVMRSLFIDRTIVRAFNENVYSEDGKLDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQTPCQRCGKFLQDGLPPTWRDFRTLEAFHDTCRQ
Length311
PositionTail
OrganismLepisosteus oculatus (Spotted gar)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Holostei> Semionotiformes> Lepisosteidae> Lepisosteus.
Aromaticity0.08
Grand average of hydropathy-0.306
Instability index45.28
Isoelectric point9.38
Molecular weight35350.20
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
retinal cone cell development	GO:0046549	IEA:Ensembl









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33670
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.90|      20|      30|     264|     283|       1
---------------------------------------------------------------------------
  231-  245 (20.13/12.90)	.....WSKSNYQVFQKVTDH
  264-  283 (38.22/31.19)	RSFMTWLRSYIKLFQTPCQR
  297-  311 (26.54/19.39)	RDFRT.....LEAFHDTCRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.34|      30|      30|      83|     112|       2
---------------------------------------------------------------------------
   83-  112 (51.12/32.04)	SHPL.HNSGLL.SLDPVQDKTPLYSQLLQAYK
  114-  145 (37.22/21.54)	SNKLqYHAGLAsSLLNQQSLKRSANQMGASAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.17|      32|      32|     147|     178|       3
---------------------------------------------------------------------------
  147-  178 (57.27/41.04)	RPKVQPTTLVLPPQYVDDVISRIGRMFPDMTI
  182-  213 (50.90/35.73)	RPNGTSAVLLVTLGKVLKAIVVMRSLFIDRTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.59|      27|      34|      18|      48|       4
---------------------------------------------------------------------------
   18-   48 (35.31/35.10)	ISAIQALRSSVTRVFDSLkDGMKNketLEGR
   53-   79 (45.27/30.15)	ITEFQDNLQSVNRDLNEL.ERLSN...LVGR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33670 with Med27 domain of Kingdom Metazoa
Unable to open file!