<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33667

Description "Transcription elongation factor A (SII), 3"
SequenceMTREEELIRIAKKLDKMVSRNNMDGALDLLKELKGYNMNLKLLQVTRIGMSVNGVRKHCTDEEVVTLAKILIKNWKRLLESAGSQKGETQSGRDSETNSSNPVGAGLTPQPAKHSPDEEDRKDSTDSKPPPPPPKHLPVEVRKESSGSRKDSTDSKSLPPNRSSLVTKKERKDSSDSKSAPPVKRPSTDAKPERRDSSDAKSNSSPKKLSIDIKRDSPKPPKTPTSPTSPLSPSFSPLGGPFPPHLLTGDSIRDKCIEMLSAALRTDDNYKEYGTNCDSMAAEIEDHIIYQEIKATDMKYKNRVRSRISNLKDPKNPELRRNVLRGAIELSRIASMTAEEMASDELKQLRNVLTQEAIREHQMAKTGGTATDLFQCAKCRKKNCTYNQVKVQTRSADEPMTTFVLCNECGNRWKFC
Length416
PositionUnknown
OrganismLepisosteus oculatus (Spotted gar)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Holostei> Semionotiformes> Lepisosteidae> Lepisosteus.
Aromaticity0.03
Grand average of hydropathy-0.937
Instability index62.55
Isoelectric point9.33
Molecular weight46404.18
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33667
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.09|      18|      26|     168|     193|       1
---------------------------------------------------------------------------
  171-  188 (35.50/12.08)	RKDSSDSKSAPPVKRPST
  194-  211 (26.60/ 9.73)	RRDSSDAKSNSSPKKLSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.31|      17|      26|     121|     137|       2
---------------------------------------------------------------------------
  121-  137 (38.81/17.97)	RKDSTDSKPPPPPPKHL
  149-  165 (29.50/11.98)	RKDSTDSKSLPPNRSSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.76|      19|      26|     306|     324|       3
---------------------------------------------------------------------------
  306-  324 (33.89/18.78)	SRISNL..KDPKNPELR..RNVL
  331-  353 (22.87/10.69)	SRIASMtaEEMASDELKqlRNVL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33667 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LESAGSQKGETQSGRDSETNSSNPVGAGLTPQPAKHSPDEEDRKDSTDSKPPPPPPKHLPVEVRKESSGSRKDSTDSKSLPPNRSSLVTKKERKDSSDSKSAPPVKRPSTDAKPERRDSSDAKSNSSPKKLSIDIKRDSPKPPKTPTSPTSPLSPSFSPLGGPFPPHLLTGDS
79
251










Molecular Recognition Features






MoRF SequenceStartStop




NANANA