<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33652

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSGENTFSQHCSWNSVFLCFDLFFIVRMFVFQRLQPVNRSRMSGSPAVRVSIESSCERQVQEVSLDGVETYVPPLSMSQNLAKLAQRIDFGQGSDSDEEDLNGESRESEWSKQNPDEEGPVKFQPCLWPWDSVRNNLRSALTEMCVLHDVLSIVKEKKYMALDPVSQDPTVAKAPQVFQLISKKKSLATAAQVLLKGAEKLSKSVAESQEQRRQRDFNAELLHLRSQWKLRKVGDKILGDLSYRSAGSLFTHHGTFEVIKNTDIDLDKKIPDDYCPLNVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFRRQPKARPGAQAWHSKLEAAQNVLLCKEIFAQLSREAVQIKSHIPHIVVKNQIISQPFPGLQLSISLCHSSVEKKNQRTSPDKTKPDDHLYVLEHNLHQLIREFHKQTLSSSVMPHPASVPFGPKRLRLAGPMAYDKAEISSLQPSDGLLEKIIKQAKHIFLRSRTARTIDCLASRIEDPQIQAHWSNINDVYESSVKVLITSQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWHVLSFSNHVGLGAIESIGNASAITVASPNGEYAISVRNGPESGCKVLVQFPRCQAKDLPKSDVLQDGKWSHLRGPYKEVHWSRMEGRNFVYKMELLMAALTPCP
Length683
PositionHead
OrganismAstyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Ostariophysi> Characiformes> Characoidei> Characidae> Astyanax.
Aromaticity0.07
Grand average of hydropathy-0.385
Instability index51.96
Isoelectric point8.52
Molecular weight76903.01
Publications
PubMed=25329095

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33652
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     334.82|     117|     160|     285|     443|       1
---------------------------------------------------------------------------
  253-  358 (91.74/99.50)	...........................HGTFEvIKNTDI...DLDKKIPDDY.................................CPLNVQIP......sdlegsAYIKVSIQKQAPDIGDLGTV.....NLFRRQPKARPgaqawhskLEaaqnvllCkeiFAqlSR.EAVQIKSHIPHI
  359-  500 (181.91/146.14)	VVKNQIISQPFPG......LQLSISLCHSSVE.KKNQRT...SPDKTKPDDHLyvL....EHNLH...QL..IREFHkqtlsssVMPHPASVPFGpkrlrlagpmAYDKAEISSLQPSDGLLEKIikqakHIFLRSRTART........ID.......C...LA..SRiEDPQIQAHWSNI
  507-  591 (61.17/24.40)	SVKVLITSQGYEQicksiqLQLNIGVEQIRVV.HRDGRVitlSHQEQELQDFL..LsqmsQHQVHavqQLakVMGWH.......VLSFSNHVGLG......................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     207.56|      69|     127|      18|      90|       2
---------------------------------------------------------------------------
   18-   90 (107.59/84.30)	LC..FDLFFIVRMFVFQRLQPVNR.SRMSGSPAV..RVSIESSCERQVQeVSLDGVETYVPPLSMSQNLAKlaQRiDF
  144-  217 (99.96/64.55)	MCvlHDVLSIVKEKKYMALDPVSQdPTVAKAPQVfqLISKKKSLATAAQ.VLLKGAEKLSKSVAESQEQRR..QR.DF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33652 with Med17 domain of Kingdom Metazoa
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