<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33609

Description Intersex
SequenceMFPQQTAMMNSNMMMQQQAQQQAQQQAQQQAQQQAAQQAQQQAQQQAQQQAQQHQISQQPNQAQQTEKVDNISKVKGLVGPLRDALSTTIKTAAQLIQQNNLTDAGSKSVDHNNSTPRFDKHLEEFYSICDQIELNLKTAKLCLQQCSSSQTYLPIPVATSQQPPPETNALTYNQYLEVVKLQIGYAKDIHDTLICAAQNISPSE
Length205
PositionTail
OrganismAnopheles darlingi (Mosquito)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Nematocera> Culicoidea> Culicidae> Anophelinae> Anopheles.
Aromaticity0.04
Grand average of hydropathy-0.792
Instability index59.52
Isoelectric point5.76
Molecular weight22894.25
Publications
PubMed=20920257
PubMed=23761445

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33609
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.12|      18|      18|      16|      33|       1
---------------------------------------------------------------------------
   16-   33 (37.30/10.84)	QQQAQQQAQQQAQQQAQQ
   36-   53 (36.83/10.61)	AQQAQQQAQQQAQQQAQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.03|      40|     102|      57|      97|       2
---------------------------------------------------------------------------
   57-   97 (61.35/40.09)	SQQP.........NQAQQTEKVDnISKVKGL..VGPLRDALSTTIKTAAQLI
  107-  144 (52.83/29.85)	SKSV.........DHNNSTPRFD.....KHLeeFYSICDQIELNLKTAKLCL
  161-  201 (46.84/25.73)	SQQPppetnaltyNQY........LEVVKLQ..IGYAKDIHDTLI.CAAQNI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33609 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MFPQQTAMMNSNMMMQQQAQQQAQQQAQQQAQQQAAQQAQQQAQQQAQQQAQQHQISQQPNQAQQTEKVDNISKVKGL
1
78










Molecular Recognition Features






MoRF SequenceStartStop




1) YLPIPV
153
158