<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33596

Description Uncharacterized protein
SequenceMDHHHPPPLPQQHGDHYRPLVLSPQPDHAHALQYQQQPQQQQQQATPPPQHHHPSLASHFHLLHLVTRLGDAIATGTRDQAFDALVEELTSQFARSQQLLNSISGTLSSKSVTVEGQMQSLEETRQLLDQRKDLIAKYKSSVEDLLKGDPTR
Length152
PositionMiddle
OrganismTriticum aestivum (Wheat)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.04
Grand average of hydropathy-0.842
Instability index54.91
Isoelectric point6.33
Molecular weight17141.86
Publications
PubMed=25035497

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33596
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.60|      16|      30|      86|     101|       1
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   86-  101 (25.43/16.13)	VEELTSQFARSQQLLN
  114-  129 (26.16/16.78)	VEGQMQSLEETRQLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.46|      31|      46|       2|      37|       2
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    2-   37 (56.37/30.35)	DHHHPPPlpqqhGDHYRPLVLSPQPDHAHALQYQQQ
   50-   80 (56.09/22.10)	QHHHPSL.....ASHFHLLHLVTRLGDAIATGTRDQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33596 with Med9 domain of Kingdom Viridiplantae
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