<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33579

Description Uncharacterized protein
SequenceMNSFVNDIFERIAGEASRLAPYNKKSLTKLSMVAMARLEMPEAEDRRQEAIRRRKRLEQMRRNEDGERLREEMERLQKEREAEVKRRLEEEERQREEQEAEDRRQEAIRRRKRLEQMRRNEDGEEIAGTIPGNQGQPDLGMPSDAELTAEESNNQATGNTDQSQDQDHSQRLEREPGLANRNVEPDVIASTKERPSELPLSGAAPSSPSADEPSPSSGAAPIQGEGERDDMPPPVAPPRRKKKQKKLAEIPRQESLESQTSSALSVSFREPSEEGSLAGGDEQPIGLPPESQSRPLSGLLTPTTTIESITRELEHSLDLASAVHGGDYIVFHKDTQSIKGESRQDLKVQRAMPKGVKQGGAPVSTTSQPPEKPSRGASQPPEKPSRGNTPETEKLLKYYNLMQGQSMTGEELTDEEILSQVIVKNLDNGETVPLLLAEERLPQCVNPLSLHIMRITSEYVSNSSLDKEAGSDGEKETGATEVAHQIKEKKKKLKKFLGKTVHKLKTAADEAFRHDDQEISEEESIPDTRYCKFKAASSHKGSYDFDQLVNCQDLSGEHTGAIWTMRFSHCGRLLATGGQDHLLRVWVLKDYYKYFDDMRQRYNNESRAKSATQGSSDSSSSSLERDRKPEEIEEEREQLKKEVMEMEGSIEKEKEEEARRAAEEDVDGAQEENGEAVFAKAPFFTYSGHTADLLDISWSKEILSQVIVKNLDNGETVPLLLAEERLPQCVNPLSLHIMRITSEYVSNSSLDKEAGSDGEKETGATEVAHQIKEKKKKLKKFLGKTVHKLKTAADEAFRHDDQEISEEESIPDTRYCKFKAASSHKGSYDFDQLVNCQDLSGEHTGAIWTMRFSHCGRLLATGGQDHLLRVWVLKDYYKYFDDMRQRYNNESRAKSATQGSSDSSSSSLERDRKRAAEEDVDGAQEENGEAVFAKAPFFTYSGHTADLLDISWSKDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGPTKLITAANFIQNGRFSVVGTYDGRCIFYDTENYFILSSSMDKMVRLWHVSRSECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGPTKLITAANFIQNGRFSVVGTYDGRCIFYDTEHLKYYTQIHVRSTRGRNAKGRKITAIEPLPGQDKILVTSNDSRIRLYDLRDLSLSCKYKGCANVSSQIKASFSHNHRYIICGSEDHAFYIWKTHYDFAKFTSVRRDRNDFWESIRVHDAVTTSVVFSPNPKLVLGPAPSAIQTASGLDPQQLVKGSSSPSPTSKKDRSDSVKGEPGAKEGKHSSLKRPPDLGEVLVSADFNGAIKVFIKHPK
Length1335
PositionTail
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy-0.827
Instability index51.49
Isoelectric point5.87
Molecular weight150314.93
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33579
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|    1130.18|     228|     283|     415|     642|       1
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  178-  312 (141.17/78.62)	..........................................................................................................................LANRNVEPDVIAstKER.PSEL.PLSGAAPSSPSaDEP......................................SPSSGAAPIQGEGER.DDMPPPVAPpRRKKKQKKLAEI..PRQESLESQTSSALSVSFREPSEEGSLAggDEQPIGLPPES..Q.SRPLSGL.....L..............TPTTTIESITRE
  313-  566 (375.81/223.42)	LEHSLDLAsAVHGGDYIV...FHKDTQSI..KGESRQDLKV..Q..RAmpKGVKQGGAPVSTTSQPPEKPsrgasqpPEKPSRgntpETEKLLKYynlmqgqsmtgeeltdEEILSQVIVKNLDNGETVPLLLA..EERLPQCVNPLSLHIMRITS.EYV......................................SNSSLDKEAGSDGEK.ETGATEVAH.QIKEKKKKLKKFLGKTVHKLKTAADEAFRHDDQEISEEESIP..DTRYCKFKAASSHKGSYDFDQLVNCQDL..............SGEHTGAIWTMR
  567-  642 (81.46/41.78)	FSHCGRLL.ATGGQDHLLRVWVLKDYYKY..FDDMRQRYNN..ES.RA..KSATQGSSDSSSSSLERDRK.......PEEIEE....EREQLKKE...................................................................................................................................................................................................................................
  698-  851 (310.93/183.38)	WS.............................................................................................................KEILSQVIVKNLDNGETVPLLLA..EERLPQCVNPLSLHIMRITS.EYV......................................SNSSLDKEAGSDGEK.ETGATEVAH.QIKEKKKKLKKFLGKTVHKLKTAADEAFRHDDQEISEEESIP..DTRYCKFKAASSHKGSYDFDQLVNCQDL..............SGEHTGAIWTMR
  852-  951 (157.15/88.48)	FSHCGRLL.ATGGQDHLLRVWVLKDYYKY..FDDMRQRYNN..ES.RA..KSATQGSSDSSSSSLERDRK.......RAA.EE....DVDGAQEE.........................................................................................................................................................................................................ngeavfakapfftySG.HTADLLDIS
 1195- 1318 (63.66/30.79)	FSHNHRYI.ICGSEDHAFYIW..KTHYDFakFTSVRRDRNDfwESiRV..HDA...........................................................................................................vttsvvfspnpklvlgpapsaiqtasgldpqqlvkgssSPSPTSKKDRSDSVKgEPGAKEGKH.SSLKRPPDLGEVL.....................................................................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      96.11|      13|      42|     955|     967|       2
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  955-  967 (25.80/17.11)	DDRYFLSGSLDGK
  999- 1010 (19.36/10.67)	NGRFSVVGTYDG.
 1060- 1072 (25.80/17.11)	DDRYFLSGSLDGK
 1104- 1116 (25.15/16.46)	NGRFSVVGTYDGR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     186.59|      41|     104|     968|    1021|       3
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  968- 1021 (79.92/73.52)	LRLWNIPDKK.VALWNEVDGPTKLITAANFIQngrfsvvgtydgrCIFYDTEN..YF
 1031- 1056 (30.80/21.15)	VRLWHVSRSEcLCCFQHID....FVTAIAF...........................
 1073- 1128 (75.87/67.13)	LRLWNIPDKK.VALWNEVDGPTKLITAANFIQngrfsvvgtydgrCIFYDTEHlkYY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     104.45|      17|      17|      56|      72|       4
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   37-   54 (26.38/12.51)	RL......E.MPEAEDrrQEAIRRR
   56-   72 (33.66/17.91)	RL......EQMRRNED..GERLREE
   75-   97 (21.22/ 8.68)	RLqkereaEVKRRLEE..EERQREE
  113-  126 (23.20/10.15)	RL......EQMRRNED..GEEI...
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.96|      14|     253|     673|     686|       5
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  673-  686 (31.48/18.28)	NGEAVFAKAPFFTY
  927-  940 (31.48/18.28)	NGEAVFAKAPFFTY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33579 with Med16 domain of Kingdom Metazoa
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