<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33577

Description Uncharacterized protein
SequenceMAFHLNQAKLRSKVRIKDGRGKPIDLLGQYISAEDDEDISIEMQEPYNVLKGLTMTDLEDLMEDIKVYVELEQGKNVEFWKDITVIAEDELTKLKKITPEGQEVSDRREGINSSVSSEVATVFKNKTHIQLLALKAQIVQRIQSGDAVDIGYWESLQQQLDAHMARARLRELHQEKLRSKLAALRQQQGVETAPLFPSAGSTSADWDPTQAGQNPPAEGAEIDIPSQDEEEDEDQTKEDEDKPGSSEAVEGAVGGEEEEGAVGGAKAEEEPESILTEEDLEEENYVEYVQGNYSPRLLEQKDLSIEVFVQDPEEDYLKLETARKHLISTGSAETDAETEFIKKAKREMGKDESSFAVEVNLQQKPYMWSDKYRPRKPRFFNRVHTGFEWNKYNQTHYDMDNPPPKIVQGYKFNIFFPDLIDKRKTPEYTLTPIPLTPEFAILTFCAGPPYEDLIMWKDVISSKDLIALGSREKAQYLNDERLHLMEQLQAKNRQLRQVMEQMRHLMWDINTMLATRHSTPDWK
Length523
PositionHead
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy-0.772
Instability index46.54
Isoelectric point4.74
Molecular weight59957.43
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33577
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.64|      16|      17|      60|      75|       1
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   60-   75 (26.96/18.73)	DLMEDIKVYVELEQGK
   78-   93 (27.68/19.42)	EFWKDITVIAEDELTK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.34|      17|      38|     218|     239|       3
---------------------------------------------------------------------------
  218-  234 (30.68/11.24)	EGA......EIDI.PSQDEEEDED
  250-  273 (16.66/ 6.12)	EGAvggeeeEGAVgGAKAEEEPES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.52|      42|     166|       5|      46|       4
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    5-   46 (71.55/45.35)	LNQAKLRSKV.RIKDGRG.KPIDLLGQYISAEDDEDISIEMQEP
  172-  215 (65.97/41.27)	LHQEKLRSKLaALRQQQGvETAPLFPSAGSTSADWDPTQAGQNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.54|      15|     155|     319|     333|       5
---------------------------------------------------------------------------
  319-  333 (25.23/23.29)	LETARKHLISTGSAE
  477-  491 (23.31/20.84)	LNDERLHLMEQLQAK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33577 with Med30 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QQGVETAPLFPSAGSTSADWDPTQAGQNPPAEGAEIDIPSQDEEEDEDQTKEDEDKPGSSEAVEGAVGGEEEEGAVGGAKAEEEPESILTEEDLEEENYVEYVQGNY
187
293










Molecular Recognition Features






MoRF SequenceStartStop




NANANA