<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33570

Description Mediator of RNA polymerase II transcription subunit 15
SequenceMCNDALRDACNPIEKSGSELEEHIFNRARDRDSYLSLVARLILHMRDSNAAKEKGLTGRMTPNMAGQQQDPMVALQGLTQMGQSHSPGGPSLQMQPNPNQMVPGVGNQGNRPMMRNQMGQPQGGNLMDQRQQQQLQNLQKLMSNPSQPGGGGMAPGSGGMHQSQQAGQTQQSQQQPSQMPGHYQGGAVGGMQQTGFPGPPGGGGNMTPQPQTGGMPVGPQGGPNQMHGMQQQGGGQMGMPQNNMSQNNMMPQQQMNQMTKPKTLYVALTIIVALTAILTLTLTLTLTLT
Length289
PositionTail
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.02
Grand average of hydropathy-0.752
Instability index70.16
Isoelectric point9.34
Molecular weight30791.65
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33570
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     214.09|      46|      50|     145|     193|       1
---------------------------------------------------------------------------
   84-  117 (50.42/ 8.12)	SHSPGGPS.L...................QMQPNPNQMvPG.VGNQGNRPMMRnQ
  145-  193 (90.09/23.33)	PSQPGGGG.MA..PGSGGMHQSQQAGqtqQSQQQPSQM.PG.HYQGGAVGGMQ.Q
  197-  241 (73.58/15.13)	PGPPGGGGnMTpqPQTGGMPVGPQGG........PNQM.HGmQQQGGGQMGMP.Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.69|      17|      20|      40|      57|       2
---------------------------------------------------------------------------
   40-   57 (25.02/16.93)	RLILHM....RDSNAAkEKGLT
   59-   79 (26.67/13.68)	RMTPNMagqqQDPMVA.LQGLT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33570 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RDSNAAKEKGLTGRMTPNMAGQQQDPMVALQGLTQMGQSHSPGGPSLQMQPNPNQMVPGVGNQGNRPMMRNQMGQPQGGNLMDQRQQQQLQNLQKLMSNPSQPGGGGMAPGSGGMHQSQQAGQTQQSQQQPSQMPGHYQGGAVGGMQQTGFPGPPGGGGNMTPQPQTGGMPVGPQGGPNQMHGMQQQGGGQMGMPQNNMSQNNMMPQQQMNQMT
46
259










Molecular Recognition Features






MoRF SequenceStartStop




NANANA