<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33567

Description Uncharacterized protein
SequenceMSGANSAANGASLEDCYTNLFAVADLSGIRWRHYSWIRPTEPVAPLEDPVLQSYAKCIKANILSVWRCHNTVRADLFAGSETQIQSKELWIYWYGDEPNFEDLIAPEIQDAVQAQGVWDNCMSYECRTLLFKSFHNSIERCLLSGGYVRLGRWFVKPFASYPIPGENLSDHHSVSFSFFLHGEKTVCSNVEVGLHQPVCRLTADHLAIAQGSATAVPVILSPYGLSGFLTGQAYKSTHQTAQRILYEWKLFYPIKQQQTSKGEHDRHHHHHHHHHHHHHNQHHPHHYHPGYRDEEEDNTVPAVVEVHVVNYPGKPGTWARQMTFSDGSVMSESVRIAYLNGSRTNPSGSLSNSMVKVRSEQVINSKWDARFKAFSFFCFIFIFQAMSFCLGHFQISWCRKHIGFLVGLYSEIIVFCAEHLGMNFMPGSYLTDGYLTGGIRMLYPSCYVLVPQSEFSHHHAMAVQAGGYIPPPSMGLGHGKINGPATPGLSSVALTPPTSPPDQQLPPGDGSGALYTGGSTLDPSLGDDGDDSCTGALIHKVTSKVWSQWLTETAPPTPPSGGAGGGGTLPNGSMASTPGTITNTSGGTGTMSSQQSSLEPCSISTEDNNSSLETKPSLVPPPQPSPTANQITWQFHDPSSKTDCACSRQKVLKLKSRSKSPSSTGSTHSGHSGIGNPAFSGSVHRQQRSQRPSTPFHHRATHTDDLIGVDQELSSRLAPIGVATTPLSSVGPVSQESKPSNNALPKPSPAAFRTPGSTDPVLTESPPSVAPSPLIPPPTGSGLNPSERDRTMPTLSPYPPPRNGETGMPQASSGPVGSSMGRNCDMGHSMDHVGLIGDLKVERDLLTGRTIGHREPVKQEEDKVWQNFRLPSEHQMDSKRPLLPLLSYEKREENENMFDSLYDPANNDEIFCQPHKKLKEEKPVQPVASVLDFPAEMDVGLRHNRPPSPEKDPYEFMENETSPTQGGRMPISGRGRMKPNGRTRGGPRRPSIKKNKVKWSDSGANRVYYDYGWHKRSIHDDEVQRRAEEEKPRPETLTADGQSNVFNTDPSKAMGAAANKALPNKGETKRLMHTDDIKVTGVGDLERLFESSSSDDDDTVSR
Length1102
PositionMiddle
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.08
Grand average of hydropathy-0.609
Instability index54.33
Isoelectric point6.57
Molecular weight120939.76
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33567
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     227.29|      29|     121|     615|     643|       1
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  470-  503 (35.17/12.16)	PPPSmglghgkINGPATPGLSSVALT.....................P.P..T.SPPDQ
  504-  530 (35.07/12.10)	QLPP.......GDG.SGALYTGGSTLD......................P..SLGDDGD
  624-  658 (34.06/11.54)	PSPT.......ANQITWQFHDPSSKTD..............cacsrqK.V..LKLKSRS
  659-  684 (28.52/ 8.46)	KSPS.......STGSTHSGHSG.......................igN.P..AFSGSVH
  685-  735 (24.41/ 6.18)	RQQR.......SQRPSTPFHHRATHTDdligvdqelssrlapigvatT.PlsSVGPVSQ
  747-  774 (34.41/11.73)	PSPA.......A......FRTPGS.TD..............pvltesP.P..SVAPSPL
  776-  800 (35.65/12.43)	PPPT.......GSGLNPSERDRT.........................mP..TLSPYPP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.16|      16|      17|     802|     817|       2
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  802-  817 (29.00/14.60)	RNGETGMPQASSGPVG
  822-  837 (29.73/15.16)	RNCDMGHSMDHVGLIG
  843-  857 (20.42/ 8.13)	RDLLTGRTIGHREPV.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.10|      15|      17|     393|     409|       5
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  395-  409 (31.94/24.58)	ISWCRKHIG..FLVGLY
  413-  429 (26.15/11.33)	IVFCAEHLGmnFMPGSY
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.96|      25|      32|     880|     908|       6
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  858-  875 (23.83/10.64)	..........KQEEDK.VWQNFRL.PSEHQ
  880-  908 (37.65/34.26)	RPLLPLlsyeKREENENMFDSLYD.PANND
  913-  938 (37.48/23.33)	QPHKKL....KEEKPVQPVASVLDfPAEMD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.95|      21|      32|      31|      53|       8
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   31-   53 (32.88/27.06)	WRHYSWIRpTEPVAPLEDPVlQS
   66-   86 (38.07/21.49)	WRCHNTVR.ADLFAGSETQI.QS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.99|      18|      20|     564|     581|       9
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  564-  581 (33.67/15.59)	GGGGTLPNGSMASTPGTI
  586-  603 (33.32/15.36)	GGTGTMSSQQSSLEPCSI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.26|      29|     195|      94|     124|      10
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   94-  124 (50.27/37.96)	YGDEPnfEDLIAPEIQD..AVQ...AQGVWDNCMSY
  291-  324 (42.99/25.54)	YRDEE..EDNTVPAVVEvhVVNypgKPGTWARQMTF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.22|      15|      18|     964|     978|      13
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  964-  978 (28.89/15.92)	TQGG.RMPISGRGRMK
  983-  998 (22.33/10.66)	TRGGpRRPSIKKNKVK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.75|      27|     324|     126|     152|      14
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  126-  152 (49.18/27.67)	CRTLLFKS.FHNSIERCLLSGGYV.....RLGR
  446-  478 (40.57/21.61)	CYVLVPQSeFSHHHAMAVQAGGYIpppsmGLGH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33567 with Med13 domain of Kingdom Metazoa
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