<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33559

Description Uncharacterized protein
SequenceMERNEGREFKQSSLGRQLNDNPGDRYSFVCNALLAICNANPEKLNNLSIMCAELTASCTTLSSEWLGVLKALCCSSIHSCGFNDLLCNVDVSDLSIHDNIAVFTAILIARHCFSLEDVVDHVALASLIAANPGISADPDAEPGARLMCHLLLCLFCTSQETPTLPSTGSSSTSGGDAAVGGGSSSSLFGSFDDFGGSGREGGNQEEGFVQGGKSSGNMSTASLSNYAKYTLKTICSQNWVRETFLKDQENLWTNEVLLDQYLSHKQIHYLLQLICYPSGTSTIGDGGSDADQKTIITRILKNLNQWTLRVSWLELQLMLKQCPSASENNALLENIAKATIEVFQLTPEEEQSSNKGGSSSGNSSRRSSGANQKGTHDSKSDPANSSVWLVAPLISKLPSSVQGRVLKQAGNILESVGQTWTSKPSSKDKDKQGQRSQASTVSHQPLLSLVLTCLKGQDEQREGLLTSLQTQLTQFLQSPKDDRWEDPKSRRLMHEALQLRLSLVGNMFDTIMRSSLTWTTEFALLLLQLITTGTVDTHTNKTLFTEVPVFQQNHLPKFWEKLRKNKEVGDKHSDGINLVRQLLPVPRKTIEVITCEPMGSLIDTKGNKITGFDSIDKKQGLQVSAKQKINPWDTLEILKNPAPLSWAWFGGIRMERKPLMYQEQYRLTLYHSHNQVKNDSHYFDPPQVPPDEEEPPPPINLEAEKPAQEMDTSQSDIKVGVVIPVEGSKETTNKKGKKRTNRKRPAPTPAQTPMREVRNPKIHVIRLIF
Length769
PositionKinase
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.06
Grand average of hydropathy-0.447
Instability index49.51
Isoelectric point6.65
Molecular weight84919.18
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33559
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     325.48|      93|     319|     216|     310|       1
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  149-  267 (119.13/91.24)	HLLLCLFCTSQET..PTLPS..TGSSStsggdaavgggsssslfgsfddfggsgreggNQEE.GFVQGGKS.................sGNMSTAslSNYAKYTLKTI.....CSQN.....WVRETFLKDQE..NLWTNEV.LLDQYL..SHKQI
  268-  310 (49.42/29.42)	HYLLQLICYPSGT..STIGD..GGSDA...............................DQKT.IITRILKNLNQWTLRV.............................................................................
  508-  590 (57.98/36.80)	................................................................FDTIMRSSLTWTTEFallllqlittGTVDTH..TNKTLFTEVPV.....FQQNhlpkfW..EKLRKNKEvgDKHSDGInLVRQLLpvPRKTI
  591-  676 (98.95/69.07)	EV...ITCEPMGSliDTKGNkiTGFDS..............................iDKKQgLQVSAKQKINPW...........................DTLEILknpapLSWA.....WFGGIRMERKP..LMYQEQY.RLTLYH..SHNQV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.94|      20|      94|      32|      51|       2
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   32-   51 (36.07/22.05)	ALLAICNA.NPEKLNNLSIMC
   53-   73 (28.87/16.23)	ELTASCTTlSSEWLGVLKALC
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     192.26|      49|      51|     402|     450|       3
---------------------------------------------------------------------------
  361-  395 (42.47/20.98)	........GN..SSRRSSGANQKGTHDSKSDPANSSVWLVA..PL...IS..
  402-  450 (79.76/45.93)	QGRVLKQAGNILESVGQTWTSKPSSKDKDKQGQRSQASTVSHQPL...LSLV
  455-  504 (70.03/39.42)	KGQDEQREG.LLTSL.QTQLTQFLQSPKDDRWEDPKSRRLMHEALqlrLSLV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33559 with Med12 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TPEEEQSSNKGGSSSGNSSRRSSGANQKGTHDSKSDP
2) VKNDSHYFDPPQVPPDEEEPPPPINLEAEKPAQEMDTSQSDIKVGVVIPVEGSKETTNKKGKKRTNRKRPAPTPAQTPMREVRNPKI
346
676
382
762










Molecular Recognition Features






MoRF SequenceStartStop




1) NKKGKKRTNRKRPAPTPAQTPMREVRNPKIHVIRLIF
733
769