<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33556

Description Uncharacterized protein
SequenceMDMTSTYMTCFFSYHNYRTGIFIRHDERTKCQRQKVLKLKSRSKSPSSTGSTHSGHSGIGNPAFSGSVHRQQRSQRPSTPFHHRATHTDDLIGVDQELSSRLAPIGVATTPLSSVGPVSQESKPSNNALPKPSPAAFRTPGSTDPVLTESPPSVAPSPLIPPPTGSGLNPSERDRTMPTLSPYPPPRNGETGMPQASSGPVGSSSMVRNCDMGHSMDHVGLIGDLKVERDLLTGRTIRHREPVKQEEDKVWQNFRLPSEHQMDSKRPLLPLLSYEKREENENMFDSLYDPANSEEIFCQPHKKLKEEKPVQPVASVLDFPVEMDVGLRHNRPPSPEKDPYEFMENETSPTGGRMPISGRGRMKPNGRTRGGPRRPSIKKNKVKDDEVQRRAEEEKPRPETLTADGQSNVFNTDPSKAMGAAANKALPNKGETKRLMHTDDIKVTGVGDLERLFESSSSDDDDTGFDDMVSQVIHRGEESSTKPFGNSLHSSTGMPGSSQTGPDLARMYPTPPSLEQQNSAFSPVNQPCHDYINHGSVQGITQLEHSAGGDFNEIEADENMGSPKPEQIQVGCYLLRARKVLNPMLL
Length586
PositionMiddle
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.05
Grand average of hydropathy-0.884
Instability index57.90
Isoelectric point6.59
Molecular weight64533.32
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP33556
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     565.07|     129|     349|      27|     157|       1
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   27-  157 (206.34/99.88)	ERTKCQRQKVLKlKSRSKSPSSTGSTHSGHSGIGNP.........................AFSGSVHRQQRSQRPSTPFHHRATHTDDL..IGV.DQELSSRLA.PIGVATTPLSSVG...PVSQESKP..SNNALPKPSPAAFRT....PGS..TDPVLTESPPSvAPS
  167-  273 (81.52/32.26)	...............................GL.NPserdrtmptlspyppprngetgmpqASSGPV..GSSSMVRNCDMGHSMDHV.GL..IG..DLKVERDL.....LTGRTIRHRE...PVKQEEDKvwQNFRLPSEHQMDSKR....P....LLPLLS.........
  279-  366 (108.41/45.48)	.................................ENE.........................NMFDSLYDPANSEEIFCQPHKKLKEEKPV.......QPVASVLDfPVEM.DVGLRHNR...PPSPEKDP..YEFMENETSPTGGRM....PIS..GRGRMKPNG......
  378-  513 (168.79/75.59)	KKNKVKDDEVQR.RAEEEKPRPETLTADGQSNVFNT.........................DPSKAMGAAANKALPNKGETKRLMHTDDIkvTGVgDLE...RL...FESSSSDDDDTGfddMVSQVIHR..GEESSTKPFGNSLHSstgmPGSsqTGPDLARMYPT.PPS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33556 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EIFCQPHKKLKEEKPVQPVASVLDFPVEMDVGLRHNRPPSPEKDPYEFMENETSPTGGRMPISGRGRMKPNGRTRGGPRRPSIKKNKVKDDEVQRRAEEEKPRPETLTADGQSNVFNTDPSKAMGAAANKALPNKGETKRLMHTDDIKVTGVGDLERLFESSSSDDDDTGFDDMVSQVIHRGEESSTKPFGNSLHSSTGMPGSSQTGPDLARMYPTPPSLEQQNSAFSPVNQPC
2) QRQKVLKLKSRSKSPSSTGSTHSGHSGIGNPAFSGSVHRQQRSQRPSTPFHHRATHTDDLIGVDQELSSRLAPIGVATTPLSSVGPVSQESKPSNNALPKPSPAAFRTPGSTDPVLTESPPSVAPSPLIPPPTGSGLNPSERDRTMPTLSPYPPPRNGETGMPQASSGPVGSSSMVRNCDMGHSMDHVGLIGDLKVERDLLTGRTIRHREPVKQEEDKVWQNFRLPSEHQMDSKRPLLPLLSYEK
3) YINHGSVQGITQLEHSAGGDFNEIEADENMGSPKPEQI
295
32
531
528
276
568










Molecular Recognition Features






MoRF SequenceStartStop




1) SIKKNKVK
376
383