<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33548

Description Uncharacterized protein
SequenceMRGLAERMRKSDSIPRRFHCCTFQLVVNQIVDMGSVTKAVSLLESNPITKDALEETRLGRLVQIVRKKATTSNLKKRCTALIKQWQSQFLPPSAVKPPRTESPVPHQEEVKGQEGSSTSDGQKPKPAKQTVNATSVDKSKSENLRRRKRQPENSPSISPSSQAPPSKKLISSSQGQSPLLQGEGNGQDDSGLNGMSSKRDVDCGRKLIKDSVKTASPKSSVPSPKSKPNINKDKGSLKKLKSERSASPKPKKKDSSLNSVSPALQPKAEKHLKPKGLSPSVAKAKSDKRVKVSPAPRVAIGKKRSSSHDRSPRPSNDSSASNSPAVVGGTSLKSTGTFSTDWDTAGFGFGDSGGESSRSATPQNVCDAPSSSKPFSIFDLDFTDAVSSQVSNTSLFDRSESPASFLDERPFTPTISAFSEEFSQRTEYSHSPSASKEEEDEAEEGEEEEEEEETSVNVMETLEDEPVTPPCPVLEGDIDRIHDDEWEGVNGCYNDKGEWFDWMQCLTVNTDVENSIQILPYVCID
Length525
PositionUnknown
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.04
Grand average of hydropathy-0.872
Instability index68.67
Isoelectric point7.02
Molecular weight57171.84
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33548
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     152.63|      27|      37|     358|     384|       1
---------------------------------------------------------------------------
  213-  236 (37.09/14.61)	KTASPKSSVPSPKS.KP................NINKDKGS
  310-  344 (36.48/14.25)	RSPRPSN..DSSASNSPavvggtslksT....GTFSTDWDT
  358-  384 (46.93/20.41)	RSATPQNVCDAPSSSKP..........F....SIFDLDFTD
  398-  424 (32.13/11.68)	RSESPASFLD....ERP..........FtptiSAFSEEFSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.19|      19|      19|     117|     135|       2
---------------------------------------------------------------------------
  117-  135 (32.25/18.24)	STSDGQKP....KPAKQ...TVNATS
  139-  156 (26.16/13.20)	SKSENLR.....RRKRQ...PENSPS
  171-  196 (19.78/ 7.91)	SSSQGQSPllqgEGNGQddsGLNGMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.09|      12|     133|     157|     168|       4
---------------------------------------------------------------------------
  157-  168 (21.19/10.81)	ISPSSQAPPSKK
  292-  303 (18.90/ 8.70)	VSPAPRVAIGKK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33548 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FLPPSAVKPPRTESPVPHQEEVKGQEGSSTSDGQKPKPAKQTVNATSVDKSKSENLRRRKRQPENSPSISPSSQAPPSKKLISSSQGQSPLLQGEGNGQDDSGLNGMSSKRDVDCGRKLIKDSVKTASPKSSVPSPKSKPNINKDKGSLKKLKSERSASPKPKKKDSSLNSVSPALQPKAEKHLKPKGLSPSVAKAKSDKRVKVSPAPRVAIGKKRSSSHDRSPRPSNDSSASNSPAVVGGTSLKST
2) SAFSEEFSQRTEYSHSPSASKEEEDEAEEGEEEEEEEETSVNVMETLEDEPVTPPCPVLEGDIDR
89
416
335
480










Molecular Recognition Features






MoRF SequenceStartStop




1) INKDKGSLKKLKSER
2) KPKKKD
3) PKAEKHLKPKGLS
4) VAKAKSDKRVKVSP
230
249
266
281
244
254
278
294