<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33547

Description Uncharacterized protein
SequenceMSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGSVVDSRALDSLSLIDAVMPDVISTRKLELRQVAANGQNNCKVEGTNGDDPPVTLIQLCRSERSGDSTARIWNLSEGQNSSQHQLVLRHCIREGGQDVPSNKDVTSLDWNCDGSLLATGSYDGYARIWSTEGRLVSTLGQHKGPIFALKWNKEGNYILSAGVDKTTIIWDAQTGECKQQFPFHVAPALDVDWQTNTSFASCSTDQSIHVCKLGSDKPIKTFQGHSNEVNAIKWDPSGQMLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPKNPNTPLMLASASFDSTVRLWDVERGICIHTLTKHQEPVYSVAFSPSGKYLASGSFDKCVHIWSTQTGSLVHSYRGTGGIFEVCWNHTGDKVGASASDGSVFVLDLRK
Length454
PositionTail
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.08
Grand average of hydropathy-0.295
Instability index38.23
Isoelectric point5.66
Molecular weight49800.20
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33547
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     350.93|      38|      39|     267|     304|       1
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  111-  159 (26.54/ 9.52)	KVegtnGDDPPVTLIQLCRSERSG...DStariwnlsegQ.N.SSQHQLVLRHC
  162-  197 (37.53/16.00)	EG....GQDVP..S....NKDVTSLDW......ncdgslL.A.TGSYDGYARIW
  198-  238 (42.88/19.15)	S.....TEGRLVSTLGQHKGPIFALKWNK.......egnY.IlSAGVDKTTIIW
  239-  279 (40.15/17.55)	DA....QTGECKQQFPFHVAPALDV.......dwqtntsF.A.SCSTDQSIHVC
  280-  321 (56.01/26.90)	KL....GSDKPIKTFQGHSNEVNAIKWDP......sgqmL.A.SCSDDMTLKIW
  322-  367 (54.76/26.17)	SM....KQDTCVHDLQAHSKEIYTIKWSP..knpntplmL.A.SASFDSTVRLW
  368-  409 (51.55/24.27)	DV....ERGICIHTLTKHQEPVYSVAFSP.......sgkYlA.SGSFDKCVHIW
  410-  450 (41.52/18.35)	ST....QTGSLVHSYRG.TGGIFEVCWNH......tgdkV.G.ASASDGSVFVL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33547 with Med16 domain of Kingdom Metazoa
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