<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33544

Description Mediator of RNA polymerase II transcription subunit 15
SequenceMKGLLEIIANPNPNKRLTLQQLTKCEQYLEGFEQVRNVRSHRFILIPFISLTLIPFHIAMNCYRSLLIPTLTRDSLFKCEQYLEGFEQQLTKCEQYPEGFEQQLATSNSTSAAGTSTTATSASATSTLDTRIMGKTNMFQPLLDAVKANIDSPYINHTLQRTFGPALTTLQGNPSHFPSPPAKKLKTEHDRSPTTQTAIPNIIQGEVARLAPKFRVNLDPMFHTSSKDVHLICRLDDKHLPSVPPINVAIPEQYPELSPNYDVSQQEYGQTPFLKLVQAALQNQVMRMPDRYTLTQILDAWEMSVRKSCLKMIAARDAT
Length319
PositionTail
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy-0.351
Instability index49.20
Isoelectric point8.46
Molecular weight35962.88
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33544
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.98|      18|      52|      17|      34|       1
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   17-   34 (38.91/23.80)	LTLQQLTKCEQYLEGFEQ
   71-   86 (28.69/15.99)	LTRDSLFKCEQYLEGF..
   88-  102 (29.37/16.51)	...QQLTKCEQYPEGFEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.37|      40|      76|     174|     214|       2
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  174-  214 (65.92/43.20)	PSHFP..SPPAKKLKTEHDRSPTTQTaIPNIIQGEVARLAPKF
  251-  292 (67.45/40.17)	PEQYPelSPNYDVSQQEYGQTPFLKL.VQAALQNQVMRMPDRY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33544 with Med15 domain of Kingdom Metazoa
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