<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33541

Description Uncharacterized protein
SequenceMEESRVKAVQALLIKAWRERWADFQWSTKIKQYIVSGSADEANQIAEMLLTQTFVGPSPSSLILSYLKHAIMSDSLEHLQVESRDIITISRNVDYMSDLLRKMCSRDNLKLLLYIGRLEDEGECLAKLEAATAAIAGPAGVVGGGPPGSGPGVGPGVGPGVGTGVGPGMGPVLGPGPGPAPLPGAGPGDPTGGTSSSTPGTPAAGAEPEKEPIKPITLWTRIETAMTDLTTLINSVSGPQPVGMQQRQQSNLEHLLSRTPQHSTKKDVKADSLKVKLENNLADIARIPMQTLHTRPISRCENTLELKALCCSVNVMTFMEVVLYCCVNMTDSLLYIQNTHADPSHTTNQPIIPMQTLHTRPISRCENTLGLKALCCSVNVMTFMEAALNLTSDIQLFVDQLLLMERLQNLPRSAIYRELLHASFLGLVEDSDPTEEIKWVAFTFLKLPQIIQRLQQSMADDTGSCEALVEGLHYLLRFYVLLDLLDTKQRCDAIKQLLGQLAACGVLNETQVKEITTARSTTSKLTRPTDTQQPVSLVVMVTRAEPLVNFIKVKWSIDFMKGWGSRKLKLFVPRVNSQEIWGI
Length583
PositionTail
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.05
Grand average of hydropathy-0.074
Instability index34.69
Isoelectric point6.25
Molecular weight63730.06
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33541
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.72|      48|      63|     287|     338|       1
---------------------------------------------------------------------------
  279-  330 (92.32/83.63)	NNLADIAR.............IPMQTLHTRPISRCENTLELKALCCSVNVMTFMEVVLyccvNMT
  331-  391 (90.41/68.30)	DSLLYIQNthadpshttnqpiIPMQTLHTRPISRCENTLGLKALCCSVNVMTFMEAAL....NLT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     122.53|      19|      19|     141|     159|       2
---------------------------------------------------------------------------
  138-  158 (37.07/14.81)	PagVVGGGPPGSGPGVGPGVG
  159-  174 (27.17/ 9.22)	P.gV.GTG...VGPGMGPVLG
  175-  186 (27.67/ 9.50)	P......GP...GPAPLPGAG
  187-  205 (30.62/11.17)	P.gDPTGGTSSSTPGT.PAAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.05|      21|     382|      98|     122|       4
---------------------------------------------------------------------------
   98-  122 (28.89/27.81)	DLL..RKMCsrDNLKLLLyiGRLEDEG
  483-  505 (34.17/18.99)	DLLdtKQRC..DAIKQLL..GQLAACG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33541 with Med24 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GPAGVVGGGPPGSGPGVGPGVGPGVGTGVGPGMGPVLGPGPGPAPLPGAGPGDPTGGTSSSTPGTPAAGAEPEKEPIKPITLWT
2) LTTLINSVSGPQPVGMQQRQQSNLEHLLSRTPQHSTKKDVKADS
137
229
220
272










Molecular Recognition Features






MoRF SequenceStartStop




NANANA