<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33538

Description Uncharacterized protein
SequenceMQVIPHKFLQQLGSLVKNNKTVLFSFPDKDSDMQSYRALIRSTQKPFAGCVHFPTEGPSSIRVLILLYSVQKLQFVGLIPIDQAAFVNTFRALVTRHKKNHEQTPPSMQQQQQQQQQQQQQSNQQQQQQQQQQQQQQQSQAQSAAAAAASAAAAAAAAAAAARQKAAQQAQAQVQAQGSAPQSASVASSSASFSNAPTVASASAAQQEELLNHHSEKYVVTMQKTYEEAEFG
Length232
PositionUnknown
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.06
Grand average of hydropathy-0.587
Instability index64.07
Isoelectric point9.44
Molecular weight25261.77
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33538
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.43|      13|      15|     109|     121|       1
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  109-  121 (28.21/ 7.58)	QQQQQQQQQQQQQ
  125-  137 (28.21/ 7.58)	QQQQQQQQQQQQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.87|      32|      37|     138|     169|       2
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  138-  169 (50.37/16.39)	QSQAQSAAAAAASAAAAAAA...AAAAARQKAAQQ
  173-  207 (48.50/15.56)	QVQAQGSAPQSASVASSSASfsnAPTVASASAAQQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.00|      18|      24|      26|      45|       3
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   26-   45 (26.89/25.23)	FPDKDSdmQSYRALI..RSTQK
   53-   72 (26.11/16.72)	FPTEGP..SSIRVLIllYSVQK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33538 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALVTRHKKNHEQTPPSMQQQQQQQQQQQQQSNQQQQQQQQQQQQQQQSQAQSAAAA
2) QKAAQQAQAQVQAQGSAPQSASVASSSASFSNAPTVASASAAQQEELLNHHSEKYV
92
164
147
219










Molecular Recognition Features






MoRF SequenceStartStop




1) SAAAAAAAAAAAARQKAA
2) SYRALIR
150
35
167
41