<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33537

Description Uncharacterized protein
SequenceMATLSLPSALPEQNGAMKAHHENGSDHDTVLPNLMQKLQMTTKQIKAWSQTSQKLRLAMSKYTDPDPVDPNRLKKCLDKLKMAIKVTSVPAMNERLDAIARQVGLKANWSIDNVYLSSDCFYVEVLLAPNGGVKDVILVHGMNGNLQSCEEMCDVLKKNDFKEFTEHLKGLCQMYQLGGDSKMKTTAFNCLQALEVDIKTLFHISGIKFGASQQQGGSPLLHITKGFVGYLTPRVGGHLMRLTYFVSPYDLLDVEKKQTKELSLKEPLPKDLGLSVTVSIETAAQRKIQTGPTVMVTDNKITNVMPLGNQNSITIPASFVLKLSEPMPMSLILLKQLQNISGVSTQYADPTAATPLNTLICKFTLDPVTFLQNQAKEGRSNKTKNYVVELPDQHHSYIINDGTNPNDLRDMQGALLSKITFTLPNTVVKIIALLRQQAVYNTLIASCVRSKDGQEPHEAVLFEVTPYTNQKLTVTFEHPAREGVACVELDLTDQSAVKAKLHSGPSEEPFCSDDYATRVLQKCLSIPITMRAIMKKAEQWLEMQESKKSVSLPPAPSSGPSGGSVFDPMSGLHRHTGLGGGGHGGTFFPSHRPHQSSYSHQLQSHSILSDLTTTMSAILPHGEGFDMHSDRPTKVAQNPMLASLLQHAALAVSTSSLSIPPPSSSPMSSPPLASGPKPHKNPMLMNLLQEHNTLTPVAAIAQPVGSMGRMIRRGKRGRSVSVDKSPKRQQSEEEHDFDDIHGHRPPGLHHRLSDTHGKMASHAMDPPKAMHTGELSALLSEIEAPIIPVAKPKRGRPCRLDSTSSQSSVGPRQSPKTPNTPTVPTTPTFAPPKTMSHSTLSTPEHPSMDDVPVGMKVDPLHSRTSMDSDIFSQNSKNIFSEDLLPDPPRSNISPEMHRQASFRSQYGSLDINDDAAGFDNDDDFGGLPSVSSAIARMGIPTGSEFDVQHRTTTDLPHPVSLSTLMSGPLSTAMQAGLETRTDMKMGVGALDLTVANLAKSMSIPAIPTTQRGRPGPNMQGVTNLSQSLPAARPRIPVSKGKPKNFIESSLAFQTEKPKPSKKRGRKPVKDSGGFSDSEAPKTKKLRKPGRLKKERRLPEYSSESSPEPCQDVARYSSITMAVNEEEPLKMTFKTIRHKPDRDQKLKGKDPGPAPKIKIRSMTSGDSATPSPNPVVREIKEEKPHMKPEHKVEQPEKVETTVQSVRTESPVMKSVKTESPVMKFDNPKETKVMRNESLPKLQKELSTGHRSEEQTNRGTSQELPKGSHDITGFKSEHLGVKSTGITKITAITHMPKVKNEQMKKSRPIESSQRPSPVSKSPIADFFPKKSLANLPRIPKISKQTSEGKQLLTPKTPTISKPAGSPSPSTKSLMGSSPKKSSWGKGDPSKVGSTKKLVTAQRFSSVSPTGRKPDGMRPGKPFSSGNKSPLTVGQGNRKPGLNIISKSLSTPTQSPNSSKASAGLIHAPNKNVSSPTTGVSKAISSQVRPSGTVSPVPKTLAGITSKAQTTPISLSAPSKLASSQAVPVSSSIKTSSVVPSTTTSSSGTSSGSSTKAISSSPVSMARLVPVASTSSTSSSSSVRSVSVANASSTSSSSSTTATTSVPTTPSITTTTSITSCATGSALPVSKSVTPPPVNLVPSSKSYPAITGIKTVSNRPPPLVIPTNIKVPAPSVTSPPTPSSVGTPTSAGPNSAKLTTPKPGMRANRKCSLMGIIDKIKEKNEKVDKTDKVEKVEKSEKTERKGLFSALGSGTPGVTESGNDDEKAIDATEKEAKETVPTDESGAEKPQMSKENKPVASSKADDYPTKESKSMTMPPTKSDTTKTPVPKVSSASSQLPARQPSPSLSTKPSGLTSSPSSQGPSSVKGKSSPKHPSQSRPPKVSTPPLTGSQKRSSSPTGKSISIKQSKPSPLTSSSSSTPTSMSSPVKARPGSSPMQRTRPIILSHSLSTYQSPEKGQQKVTKVQLAMQPDLMPHSTLPGQGTSASNVSKGQTGSSQVCVPSPSIKPQAVSINKPTQDPTKKSTTVTPKPTDTTKSDIKLVTTTPKPVKVDQSAIMKPKPNNGKEPSSQSQQNSQRSDAKGSSDNGSSKMPSMSSKKPDSKPTDPRARKDSLGSSKDKDGETSKSPKPAVVRSVSKESKISFGSGSQDGKTSTKPELKQTTESAQKVKVIPPLVKSVSQGDKEKLKGDEFRKSESKNIVPEIKGIDKQEVSEEINKISTSAKPQGIDFKVPSPAMVPSPKTSAVSPRPLIKPVGSPKPVVAYSPKAPSPHSSASGVPSPGSALSPKAPTKRSATPVGNQPPPPKKQCTISTPYSPVESDDDFGMIIDMPQSPRSISQQKSQRSPRPDSRNSNTQTEGGSTSPRSAVAHSPLGQLAQSPLGIGKSPASVKSIASSDSISRSPCKIDDDLMDEALTSCIQTEDV
Length2421
PositionMiddle
OrganismStrongylocentrotus purpuratus (Purple sea urchin)
KingdomMetazoa
Lineage
Aromaticity0.03
Grand average of hydropathy-0.638
Instability index58.09
Isoelectric point9.75
Molecular weight258190.44
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33537
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     341.11|      45|      47|    1504|    1548|       2
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  803-  843 (52.05/11.83)	TSSQ..SSVG......P...R....QSPKTPNTP...T....VPTTPT.FAPPKTMS.HSTLSTP.
 1421- 1465 (40.95/ 7.46)	SSGNKSPLTVgqgnrkP...G....LNIIS...........KSLSTP..TQSPNSSK.ASAGLIHA
 1488- 1526 (50.67/11.29)	SGTV...SPV......P...K....TL...AGIT...S...KAQTTPI.SLSAPSKL.ASSQAVPV
 1527- 1568 (60.66/15.22)	SSSIKTSSVV......P...S....TTTSSSGTS...S...GSSTKAI.S.SSPVSM.A..RLVPV
 1839- 1886 (52.57/12.04)	RQPSPSLSTK......P...S.gltSSPSSQGPS...SvkgKSSPKHP.SQSRPPKV..STP..PL
 1887- 1933 (39.20/ 6.77)	TGSQKRSS.S......PtgkS....ISIKQSKPSpltS...SSSSTPT.SMSSPVKArPGSS....
 2268- 2311 (45.00/ 9.05)	PHS..SASGV......P...SpgsaLSPKA...P...T...KRSATPVgNQPPPPKK.QCTISTP.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     165.93|      26|      27|    2063|    2088|       5
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 1056- 1081 (26.64/ 7.39)	.KP..KPSKKRGRkpvKDSGGFS...D....SEAPK
 1369- 1394 (27.74/ 8.07)	KSLMGSSPKKS.......SWGKG...DpskvGSTKK
 2063- 2088 (41.26/16.46)	KEPSSQSQQNSQR...SDAKGSS...D....NGSSK
 2095- 2123 (39.20/15.19)	KKPDSKPTDPRAR...KDSLGSSkdkD....GETSK
 2131- 2152 (31.10/10.16)	RSVS....KESKI...SFGSGSQ...D....GKTST
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     156.76|      39|      41|     604|     644|       6
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  583-  602 (28.01/ 6.87)	.................HGGTF.FPSHRP....H...QSSYSHQL
  604-  644 (66.03/32.93)	SHSILSDLTTTMSaiLPHGEGFDMHSDRP....TKVAQNPMLASL
  646-  687 (62.72/26.66)	QHAALAVSTSSLS..IPPPSSSPMSSP.PlasgPKPHKNPMLMNL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     168.18|      45|      45|    1136|    1180|       7
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 1083- 1140 (37.77/11.78)	..KKL..RKPG...RLKKER..........RLPEYSSESS.PEPC.QDVARyssitmavneeeplkmtfktiRHKPD
 1141- 1192 (65.78/27.10)	RDQKLKGKDPGPAPKIKIRS..........MTSGDSATPS.PNPVVREIKE..............ekphmkpEHKVE
 1786- 1829 (32.86/ 9.09)	KPQ..MSKENKPVASSKADDyptkesksmtMPPTKSDTTKtPVPKV...............................
 2005- 2029 (31.77/ 8.50)	KPQAVSI..NKP.....TQD...........PTKKSTTVT.PKP.................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     280.68|      56|     502|    1206|    1276|       8
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  999- 1039 (61.88/19.85)	............KSMSI.PAIPTTQRG.RPGPNMQGVTN..LSQSLPAARPRI.PVSK
 1218- 1269 (79.12/37.11)	SPVMKFDNPKETKVMRN.ESLPKLQKELSTGHRSEEQTNRGTSQELPKGSHDI.....
 1277- 1318 (50.02/17.02)	...LGVKSTGITKITAI.THMPKVKNEQMKKSRPIESSQRP............sPVSK
 1319- 1363 (62.80/20.32)	SPIADF.FPK..KSLANlPRIPKISKQTSEG..KQLLTPKTPTISKPAGS........
 2236- 2260 (26.85/ 7.56)	.............................PSPKTSAVSPRPL.I.KPVGSPK..PVVA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     144.22|      37|     343|     544|     580|       9
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  544-  580 (69.23/32.88)	QESKKSVS...LPPAPSS.......GPS..............GGSVFDPMSGLHRHTGLGG
  873-  926 (49.53/20.91)	QNSKNIFSedlLPDPPRS.......NISpemhrqasfrsqygSLDINDDAAGFDNDDDFGG
 1672- 1703 (25.46/ 6.29)	.....SVT...SPPTPSSvgtptsaGPN..............SAKLTTPKPGMR.......
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.54|      23|      41|    2338|    2361|      10
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 2338- 2361 (37.69/16.61)	KSQrSP.....RPDSRNSNTQTEGGSTSP
 2373- 2400 (32.85/10.51)	LAQ.SPlgigkSPASVKSIASSDSISRSP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.65|      26|      41|    1712|    1737|      11
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 1712- 1737 (40.40/30.88)	GIIDKIKEKNEKVDKTDK..VEKVEKSE
 1754- 1781 (37.25/27.73)	GVTESGNDDEKAIDATEKeaKETVPTDE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.69|      31|      42|     702|     733|      13
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  702-  733 (49.30/29.45)	QPVGSMGRMIRRGKRGRSVSVDkSPKRQQSEE
  744-  774 (58.39/31.57)	RPPGLHHRLSDTHGKMASHAMD.PPKAMHTGE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.25|      21|      25|    2167|    2191|      14
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 2167- 2191 (26.10/27.16)	KVIPPLVKSVsqgDKEKLkGDEFRK
 2195- 2215 (35.15/20.68)	KNIVPEIKGI...DKQEV.SEEINK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.78|      21|     393|    1588|    1609|      15
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 1588- 1609 (29.80/16.56)	ASSTSSSSSTTATTSVPtTPSI
 1984- 2004 (36.98/17.33)	ASNVSKGQTGSSQVCVP.SPSI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33537 with Med1 domain of Kingdom Metazoa
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