<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33526

Description Uncharacterized protein (Fragment)
SequenceMRDSKNEKQSPLKISESRPPTWLLEAHSTADLGYTGYFPPRPGQEVDILTEANVKNGLILPATVSAETFTAQEVVTKRLHEDAMSGLEDLMNQIFARRAEAVPAIPPSSFRMPPRVTLNDAKRQAWFADLANPDVPLSKLGKSVPHGAKGQDLLDLLHVNNVAIPRAIWFLRVFGANETAGLRNKPTYDPTQYSVDWANVVTGYMKKQLGEILLPSAPRPGLNIKSTFKGVLADSETRDRWISRFTYCLNLLRSFYSEGLVDNRTFLSWLVLQMNTCNLAQASFVARLVDEYMEGLVSCRALVRPLIEACLGKITEIMSTSAKLHLSNLSQILMTFIARCCFNMPNAFVSPRMWIAHSSLLSDILAGDACETPDTLFEHTEIFLRRLLAENHADIKKRNEAMLFRNLPPRVLARLSEAVTDVMHLNSISVNTDLDTFPFFDPPTTDAQFALKVDRLLTWSVTPLQYGDHRPYAAVTLLRRWCDRAGDRATRRDYNCPDDLLQDLLFDWLDSSTVAGAPENLQAVALLFGGLVKRELFSYAKYFQRLIARCEPGLLHSAEDGSRHREFLRWIPLQKSTSSIVNQRKVTLHGVRARETPEELNEREIRREIRLLIPDIFSVEPQPMLHPMGPGHSDLTTFLSSPRYEQVRTVRQWLLPLLLKTLPDQAVRSFCMAVELMAQAKCYGSILDLSLAMLDLAPFNVDLLGMLIETIRRYLSIWASMNVMKTIANALYAANSACKARGMHSRVLLTLLLEIDNGRNLDPNSRKVIESEMMSYAQALRAADGNPETVPTHLQEILLLPNDLRPGAAQLLANNLWYRYRTAPDWAWRVWDNTFASLRIKPQLPQDAAGARARALLYAEFLLHIDEHLPNGLDEHVSNWFSGPGVAELIAIDAEAWDCVMVALLYLTVQGALSTTTILQGLVYPMWQRALNPPPPGGTQAISQPPEVYLRAAHEIFARLMLRTESNGDEIPPTDFIQSQRIRTRRQDVCAEPHLLLLVSNIPVLVFVENDPHIPEELRQLSSSIRHAVCEITEFRQGVYRDLSAVRAAFERWLQYDSLDESLVEPLMDALRLILNVARTTIGSSEWLDTSALLSPWKLAATAIEVQFGLKQMGERLALGTPHTHGKTKVDKLIAQFLHHHMTTEEADFVADMAKGVGPTIVSKFVNMGLYTIAGILKTTSVPSQQTLDVVGERLRLLAHVVEPVRDDPLQLPTMDAPTQNDFFETLMNKFEALGSILSPKPPAKSEMTPAQATQAAILMARLLQFDLAFRGVWTPKTRQLSGKMCEVVFDLALAHGAGDHLNPIAFPLLLDTYCYLLDGMLVFFGSVFMPIDGGITEIAYDTKSPAPDLFRNYPQRSMMDLPPDMPEEYRQNLRSLLPYCSPNEVVADLAYASRDAAGRVVVGAAVQNRPWEWVENLGDPLAGDAKDEKQSDEHRTAVVKNTASLSLELFAARATGDAIVPAPAHDTALLDATLRSFHDNLSTESIFARDWRETRVSLQ
Length1500
PositionKinase
OrganismHeterobasidion irregulare TC 32-1
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Russulales> Bondarzewiaceae> Heterobasidion> Heterobasidion annosum species complex.
Aromaticity0.08
Grand average of hydropathy-0.117
Instability index47.28
Isoelectric point5.84
Molecular weight168025.11
Publications
PubMed=22463738

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33526
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.79|      28|      33|    1177|    1204|       1
---------------------------------------------------------------------------
 1177- 1204 (44.44/22.91)	LKTTSVPSQQT.LDVVGERLRLLAHVVEP
 1212- 1240 (43.35/22.20)	LPTMDAPTQNDfFETLMNKFEALGSILSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.15|      31|     207|    1250|    1280|       2
---------------------------------------------------------------------------
 1250- 1280 (54.51/33.49)	PAQATQAAILMARLLQF..DLAFRGVWTPKTRQ
 1462- 1494 (49.64/29.79)	PAPAHDTALLDATLRSFhdNLSTESIFARDWRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     229.17|      76|     207|     651|     772|       3
---------------------------------------------------------------------------
  479-  565 (115.49/56.59)	RRW.....CDRAGDRATRR.........DYNCPDDLLqDLLFDWLDSstvagAPENLQAVALLFgGLVKRELFSYAKY.FQRLIArcepGLLHSAEDGSRHR
  651-  741 (113.68/132.37)	RQWllpllLKTLPDQAVRSfcmavelmaQAKCYGSIL.DLSLAMLDL.....APFNVDLLGMLI.ETIRRYLSIWASMnVMKTIA....NALYAANSACKAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.76|      38|     207|     148|     185|       4
---------------------------------------------------------------------------
  148-  185 (64.31/36.52)	AKGQDLLDLLHVNNVAIPRAIW.....FLRVFGANETAGLRNK
  356-  398 (57.45/31.87)	AHSSLLSDILAGDACETPDTLFehteiFLRRLLAENHADIKKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.48|      26|     175|      20|      59|      10
---------------------------------------------------------------------------
   20-   46 (47.42/23.18)	PT.....W..LLEAHSTADLGYTgYFP..PRPGQEV
  190-  224 (35.07/10.12)	PTqysvdWanVVTGYMKKQLGEI.LLPsaPRPGLNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.72|      46|     575|     776|     830|      12
---------------------------------------------------------------------------
  776-  830 (63.81/55.47)	YAQalRAADGNPETVPTHLQEIL..LLPNdLRPGaaQLLAnNLWYRYRtapDWAWRV
 1354- 1401 (82.90/43.16)	YPQ..RSMMDLPPDMPEEYRQNLrsLLPY.CSPN..EVVA.DLAYASR...DAAGRV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.32|      20|     894|      94|     124|      16
---------------------------------------------------------------------------
  101-  120 (39.07/22.66)	AVPAIPP...SSFRMPPRVTLND
  930-  952 (32.25/ 8.38)	ALNPPPPggtQAISQPPEVYLRA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.50|      16|      39|     256|     271|      17
---------------------------------------------------------------------------
  256-  271 (29.86/19.79)	YSEGLVDNRTFLSWLV
  292-  307 (29.64/19.58)	YMEGLVSCRALVRPLI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33526 with Med12 domain of Kingdom Fungi
Unable to open file!