<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33518

Description Uncharacterized protein
SequenceMDKTFVEEEFMMAGMGGTNGSNSNMFGAFSMPPNNGMGNGGGLNMPMNMGAMQSMMYMGVPQMASMYNPSASNSVDELGSAAIEFPPELGGDPPKLTASSSLNSGGAMDPSAMMGMNSMMATGMNPHMYLNPGMQQMQYNPMFGGYPPQNLNMMQQQHQMMQQQQYLQFMQQNMINMNNNQQGGNNSNPGTSTSNNNMMANPTPQATPPPPAAPPSASSGATTNAGGSWRSPSDDPQRKDVIGRIIRFLQMQKPNAPPDWIRRLPQMARKLEEALYRKASSKPEYNDMNTLQQRLHVVAQEFKNKDWRSADDNGIRQDLIHRIVMLLRAQNPNATPDWINRLPHMAKKLEEMLYQKATSKAEYTDNARLKERLQVVATEIHKNNQKKAAKVPPDAPTTASALKMEALGMPAELRHPFLDIARAIASYLTPRTITEYNHKVLTMIQNIGQHRVVLMRQQQRLMQLKHACECHADKCAHPACAEMKPLWAHIQTCPESENCATPHCVSSKYVLAHYQQCMKSTCVVCASLNQPPPPQQQQQQQLNHLQQQQQQQMLQHHHQLQQFKQQQQQQHQAVLAQQNQPLQMPRELKDELQVSPFASHAKLISSTLPENIIRDYHQKVDFMMNDSSQAQHQSILHRQQQRLLELRHASECKADKCAHPACAEMKPLWTHVVTCRQADTCPTPHCVSSKYVLAHYQHCMKPHCVVCLPLRDVKKTDGGGGGTADKIRQFTDKAKGAANMLTTRQIQDYHAKVLGMMHVKCVAQNQTILERQQQRLLHLRHALFCPADKCAAAYCAEMKKLWSHVMGCKKSESCAYAHCLSSKYVLSHFQQCTNPACVVCALVRDAHEMEKAMAEDARANMDKKDQPLAPANQPVKRGLESTETNQQPPSKKQALAVPSPPESCGTRSAKADNSQQQHSMIACPPELLKDEPDVLKDDEFAFMQDIDEELGGEVLEFDEW
Length960
PositionTail
OrganismAphanomyces astaci
KingdomOomycetes
LineageEukaryota> Sar> Stramenopiles> Oomycota> Saprolegniales> Saprolegniaceae> Aphanomyces.
Aromaticity0.05
Grand average of hydropathy-0.665
Instability index55.12
Isoelectric point8.27
Molecular weight107610.00
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
metal ion binding	GO:0046872	IEA:UniProtKB-KW
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33518
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|    1009.09|     178|     179|     409|     587|       1
---------------------------------------------------------------------------
  225-  408 (179.25/76.53)	AGGSWR.SPSDDPQR...KDVIGRII.....RFLQM..QKpNAPP..DWIRRLPQMAR..KLEEALYRKAS..SKPEYNDMNTLQQRL............HVVAQEFKNKDWRSAddngIRQDLIhrIVMLLrAQN......................PNATPDWINRLPHMAKKLE....EML.......yqkatskaeytdnarlkerlqvvateiHKNNQKKAAKVPPDAPTTASALKMEAL....G
  409-  587 (334.68/152.30)	MPAELR.HPFLDIARAIASYLTPRTITEYNHKVLTM..IQ.NIGQ..HRVVLMRQQQRLMQLKHACECHADKCAHPACAEMKPLWAHIQTCPESENCATPHCVSSKYVLAHYQQC....MKSTCV..VCASL.NQP......................PPPQQQQQQQLNHLQQQQQ....QQML.....Q...........................HHHQLQQFKQQQQQQHQAVLAQQNQPLqMPRE
  588-  712 (227.65/99.25)	LKDELQvSPFASHAKLISSTLPENIIRDYHQKVDFM..MN.DSSQaqHQSILHRQQQRLLELRHASECKADKCAHPACAEMKPLWTHVVTCRQADTCPTPHCVSSKYVLAHYQHC....MKPHCV..VCL.................................................................................................................PL...RD
  723-  926 (267.50/117.95)	TADKIR.Q.FTDKAKGAANMLTTRQIQDYHAKVLGMmhVK.CVAQ..NQTILERQQQRLLHLRHALFCPADKCAAAYCAEMKKLWSHVMGCKKSESCAYAHCLSSKYVLSHFQQC....TNPACV..VCALV.RDAhemekamaedaranmdkkdqplAPANQPVKRGLESTETNQQppskKQALavpspP...........................ESCGTRSAKADNSQQQHSMIA.......CPPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.68|      16|      21|      14|      31|       2
---------------------------------------------------------------------------
   14-   29 (33.04/14.23)	GMGGTNGSNSNM.FGAF
   36-   52 (26.63/12.04)	GMGNGGGLNMPMnMGAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.29|      13|      15|     106|     119|       3
---------------------------------------------------------------------------
  106-  119 (21.62/14.24)	GaMDPSAMM..GMNSM
  123-  137 (20.66/ 8.59)	G.MNPHMYLnpGMQQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.30|      21|      22|     138|     158|       4
---------------------------------------------------------------------------
  138-  158 (44.34/21.41)	QYNPMFGGYPPQNL.NMMQQQH
  165-  182 (23.36/ 7.73)	QY....LQFMQQNMiNMNNNQQ
  183-  199 (21.59/ 6.57)	GGNNSNPGTSTSNN.NMM....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.53|      15|      25|      61|      80|       6
---------------------------------------------------------------------------
   61-   80 (18.06/24.82)	PQMASmyNP...SASNSvdeLGS
   87-  104 (22.47/11.46)	PELGG..DPpklTASSS...LNS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33518 with Med15 domain of Kingdom Oomycetes
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