<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33516

Description Uncharacterized protein
SequenceMSDPVGIADIMAGRVGAVRAAAEALIFELGSLGSRASDDGEANATSIATSLKGKVDRVQSNLAILKKLSVEFEDKTKNIEKVTQAQRNLMFEYYWKLQVRELAGKGANVWLSQMTTWFPRMEYLSSHASALAPAGYATHPIDKVKAPMKVNDRFTPKSSKRARSIVFDEQGDLQPADLGQMMEYIMKRNKAAKFWKQTETTRGGRKVITSITCHLHNELVVHMSFCPHIPEDGPKDGDVSASPMTPSTPNSPAFGMNRGLRAKRRQASLKAKKVMRKSKRDDLLAKVKMAAEEATKIEQEELRKLILDAKESGKEQETARAAGLQVTKFIQRISIFPLNEPAPLGAWSESKHKLFEQITLHARQALSYLRVHYPDTCFYHFFTWMSYFDKVYQTPCNACKKILAKTADDSTYVPPAFRDYSTGLAYHSNCM
Length431
PositionTail
OrganismAphanomyces astaci
KingdomOomycetes
LineageEukaryota> Sar> Stramenopiles> Oomycota> Saprolegniales> Saprolegniaceae> Aphanomyces.
Aromaticity0.08
Grand average of hydropathy-0.455
Instability index47.53
Isoelectric point9.45
Molecular weight48324.03
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP33516
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.87|      11|      20|     227|     237|       1
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  227-  237 (22.69/16.28)	PHIPEDGPKDG
  249-  259 (22.18/15.74)	PNSPAFGMNRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.43|      26|      27|      54|      79|       2
---------------------------------------------------------------------------
   54-   79 (42.40/31.65)	KVDRVQSNLAI..LKKLSV.EFEDKTKNI
   81-  109 (37.03/26.76)	KVTQAQRNLMFeyYWKLQVrELAGKGANV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.08|      13|      29|     157|     172|       3
---------------------------------------------------------------------------
  157-  172 (17.44/18.48)	KSSKRARsivFDEQGD
  187-  199 (23.64/15.01)	KRNKAAK...FWKQTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.92|      20|      21|     267|     286|       4
---------------------------------------------------------------------------
  267-  286 (31.36/20.04)	ASLKAKKVMRKSKRDDLL.AK
  290-  310 (25.56/15.19)	AAEEATKIEQEELRKLILdAK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP33516 with Med27 domain of Kingdom Oomycetes
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