<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33511
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MAAQADMQVDLGVDDLFGDDAMNLQTRPSKRLLQRINELRTRGACQSLAWSKTGIIATVAPDGRSIELRYLRAHPKDASWGLSEPTTFVPEGSLLGGPIVHLAWSPTQTSDLAIIDAVGRVLIVNFSANVNRPTTQRKWDDDPTDDLNAVVGTFWLNLLPTHRNQANPLHAPAYKEGNSNSYTFDTSLQVSNAPYHPNPTRSALVYVTTNGLLKMFWSQNNNKIQETSFELDNITSSNDLVTHAAIAPDTKAKCMWVAFATSSKQLHLAQCQLSWGLSQETMKGAMAAGQSLNPSFAGKHVAITSWLPGNTTEPPSESLANQLSLLEFVPGTFDQTTKSWLWPVILAVRSFVPTADTPYNQEAQSIIDRWEVTSDQPQTLHPAFENLGSRRNSVGAAPAPAFRLKKLEPVVVNKIAVGISLVRLNTAICVTYSDGTVEYRDRTTLNPLWTEVNLDRINSIHEAGFTQNGEQSCLQAAVSATLASVVQLCEDNTVKWHTVAYTLTDLASMNDSQYQAVVAALTISIGQAAASNGNIDDVLAVARQFLGKTRFPCDLISEMVRMMRVPIDYSEEPHHDTLVRNQLLQLCLSVLNHLGWNGEFQERSFRSKMAMFALNLRNIVILITIANNAPGHMKNTTPLDEPEVVDALAGCCKWSIDLLCWIVDSLFCLLNDQKFQDHFTTPAKYSEMTPYLLAKKNIALHMILSSSIRGLLSAVCRRIQHLQFISHKTINYYETMDTNTTNPPPAALQVAYQKMLRYTSNPLVNVSKFDELLTTIGTDIKQQYTQQFAQFSHRAMEAAKKTQPNPPKSIGDDAIKRAQLHCEMTMLLGNAPPLPLLTVLKKFFQTDLPQFRAFCQPSELFFANYNLLEVDDDEVVLAARRERGARVDLFKRVEIFRGKKLTNSSGEEVAVDWRRCSRCASVMEDVIPFVMAKPGIAFVLSQQRFCACGGKLAILKKNELVG |
Length | 962 |
Position | Tail |
Organism | Pestalotiopsis fici (strain W106-1 / CGMCC3.15140) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Xylariomycetidae> Xylariales> Sporocadaceae> Pestalotiopsis.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.169 |
Instability index | 38.07 |
Isoelectric point | 6.61 |
Molecular weight | 106864.85 |
Publications | PubMed=25623211
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP33511
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.25| 22| 53| 43| 64| 1
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43- 64 (40.96/29.81) GACQSLAWS..KTGIIATVAPDGR
97- 120 (35.29/24.59) GPIVHLAWSptQTSDLAIIDAVGR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 120.00| 36| 150| 217| 253| 2
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217- 253 (56.07/39.87) WSQNNNKIQETSFELDNITSSNDLVThAAIAPDTKAK
370- 405 (63.93/40.60) WEVTSDQPQTLHPAFENLGSRRNSVG.AAPAPAFRLK
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 175.13| 55| 62| 536| 596| 3
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536- 596 (88.66/75.70) DDvlavaRQFLGK.TRFPCDLiSEMVRMMRVPIDYSEE.....PHHDTLVRNQLLQLCLSVLNHLGW
601- 661 (86.47/58.88) QE.....RSFRSKmAMFALNL.RNIVILITIANNAPGHmknttPLDEPEVVDALAGCCKWSIDLLCW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 103.59| 31| 32| 275| 306| 4
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276- 306 (54.23/38.62) GLSQETMKGAMAAGQSLNPSFAGK.HVAITSW
309- 340 (49.36/27.89) GNTTEPPSESLANQLSLLEFVPGTfDQTTKSW
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