<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP33489
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MENEFNADPFFNDGPLQQINEGSLQQIDQIDPAGVGIDALNNVPLPVNPLIVQRILNLHQGGSSTRLCWSRQGHIANISEDGSSIDLHCLVFDRTRRTWVVGAKRTEHVGLGELASLAWSPMATDIAVVDTRGRLSILRPTGTAANRLSEVRSGTIDDIQDLGQAIGMGWLSQDRAERPKQVVQFTSKQEGGDKWVHNLVKAMPMQPLYQRAIVVINRQGTMALVYEKPDSTFAKTTSQLAPKTDTIFTHAAFSPTTEGKLMVALHAHDGTLSAYHVSIDFSPMRQDPDALPLLNSQLAASRFPRIGNTSIDGQMYDSDSQCLTHLGIIPTSEIEKTAPQPPTVYGIYANINKNMGATDGGFISSGTIRRWTLSSVHQTLLPKFNHLPDKATNSAPVFTTSVQLLPEKEEQGITNAGVLDNGQGLFITTLDGRTDFLATEDLSSLSFAASENTTSSLAQSGFNFPLLSNQTSISLSPNVCCSAVLSPASTVSLVPADFHPPTAESSQSLDPTSSSADAAAAVIVLSFARSCWTNSNIDDLLSMVLHTFSASMATPLIVSLYHTLFREGEFMHEKDSRSELEKVVQKPVLTKVFSFHYGVAFLSIKDVPPSSPIPLSAQWVWVAANLRFVAQLLYISIREVQNPSAEPSSELVEMVCGNIKWTLDLVRYIAASIFEVSDRETNPEFFDKPQGGHVVDGSQGLVALLLNCHWSRQFFIAIVRAMRVLCKLPEPRSAQQTEIIRTIMQWSQGKGLSLIAVEALLDPRWSGWADNELEGDLAKISSRQIRMMATGVVEGGFQGTVRRVLGKLFNVKGGMRDKGAVDRLKLWSHKVDLGWVLLDDEWEGARPEGRKKRVFDVHKKKVITKGKREIISGESGEEMIKRCVRCGRHNEDVNGMGKEFPRHVAGLMMRCVCDGPWIVEPWAKAIT |
Length | 927 |
Position | Tail |
Organism | Cyphellophora europaea CBS 101466 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Chaetothyriomycetidae> Chaetothyriales> Cyphellophoraceae> Cyphellophora.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.162 |
Instability index | 42.10 |
Isoelectric point | 6.18 |
Molecular weight | 101844.89 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP33489
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 248.00| 64| 79| 34| 97| 1
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34- 89 (89.13/52.71) ....................GVG.IDA.LNNV..PLPVNPLIVQ...RILNLHQGGSST.RLCWSRQGHIANISEDGS..SIDLHC
90- 170 (80.25/46.71) LVFDRTRRtwvvgakrtehvGLGeLAS.LAWS..PMATDIAVVDtrgRLSILRPTGTAAnRLSEVRSGTIDDIQDLGQ..AIGMGW
171- 220 (27.86/11.29) LSQDRAER..pkqvvqftskQEG.GDKwVHNLvkAMPMQPLYQR...AIVVINRQG..............................
282- 322 (50.76/26.77) ...............................S..PMRQD...PD...ALPLLN.....S.QLAASRFPRIGNTSIDGQmyDSDSQC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 155.19| 47| 79| 715| 767| 2
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715- 767 (74.38/62.30) FIAIVRamRVLCKLPEPRSA.QQTEIIRTIMQWSQGKGLSLIaveaLLDPRWSG
797- 844 (80.81/52.10) FQGTVR..RVLGKLFNVKGGmRDKGAVDRLKLWSHKVDLGWV....LLDDEWEG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 46.77| 15| 15| 443| 457| 3
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443- 457 (24.24/14.56) SSLSFA.ASENTTSSL
460- 475 (22.53/13.02) SGFNFPlLSNQTSISL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 47.27| 14| 15| 535| 548| 7
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535- 548 (23.61/14.96) SNIDDLLSMVLHTF
551- 564 (23.65/15.00) SMATPLIVSLYHTL
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