Description | Mediator of RNA polymerase II transcription subunit 4 |
Sequence | MGGSIREEMEVALHEHRFLVTKLLESLNTASLPPSTITATRLRTVNETFNKVLEKDRDLLAAVKKLARHQVAQKELLRIEAEIENKKQKVVQYAAQLRRSQEDIANVLRKHRVVLQNAKQKSKVVLDPRDIVAYAHRIAGTTSAPKEWQPGFPMFGFMPPAPQEHMMRAGVLSRGIVAEIVTQGPEKYTSTAARVKQDGDSEAIEKLNIPIGLGASDAQIRKQIPPGWKPGDPVDLPLDALLHYMGRSFFTVHGIILPESWKPGDPLPPDAMEMLRKKFKLPEKRAALYDDEVVDDVESLRKKRKLEEGEKADEGTADSDSSSDSSDSDEEAPNTISLSLSSSEDESDDDSD |
Length | 352 |
Position | Middle |
Organism | Phytophthora parasitica (strain INRA-310) |
Kingdom | Oomycetes |
Lineage | Eukaryota> Sar> Stramenopiles> Oomycota> Peronosporales> Peronosporaceae> Phytophthora. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.595 |
Instability index | 54.20 |
Isoelectric point | 5.55 |
Molecular weight | 39160.90 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364141 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP33468 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 95.25| 25| 30| 210| 239| 1 --------------------------------------------------------------------------- 213- 239 (45.90/41.79) LGASDAQIRKQI.PPGWKPGDPvdLPLD 245- 270 (49.35/28.76) MGRSFFTVHGIIlPESWKPGDP..LPPD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 85.97| 22| 22| 310| 331| 2 --------------------------------------------------------------------------- 291- 312 (29.66/14.97) DEVVDDVESLRKKRKLEEGEKA 313- 334 (35.75/19.37) DEGTADSDSSSDSSDSDEEAPN 335- 352 (20.56/ 8.42) TISLSLS.SSEDESDDDSD... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 84.86| 27| 54| 39| 65| 4 --------------------------------------------------------------------------- 39- 65 (42.74/27.50) ATRLRTVNETFNKVLEKDRDLLAAVKK 94- 120 (42.12/27.01) AAQLRRSQEDIANVLRKHRVVLQNAKQ --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) LRKKFKL 2) LRKKRKLEE 3) SDEEAPNTISLSLSSSEDESD | 275 300 328 | 281 308 348 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab